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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040506 through 18771 annotations produced 1 hits



ACXE (ACXE):

Annotation Number : CG17178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040506
Gbrowse : chr2L:12925618-12929755 (+) // 100.0 //
Probeset : 1624622_at
Accessions : protein= NP_652601;, nucleotide= NM_144344;
Pathway : 0016021 // integral to membrane // not recorded
Interpro : 0004016 // adenylate cyclase activity // not recorded /// 0004016 // adenylate cyclase activity // inferred from sequenc
FlyMine data for FBgn0040506.
Homophila reports that CG17178 is a close match (2e-12) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head2 ± 00 of 4 0.40None
Eye1 ± 00 of 4 0.18None
Thoracicoabdominal ganglion1 ± 00 of 4 0.10None
Salivary gland4 ± 20 of 4 0.59None
Crop4 ± 20 of 4 0.60None
Midgut4 ± 20 of 4 0.60None
Tubule4 ± 00 of 4 0.60Down
Hindgut1 ± 00 of 4 0.10None
Heart1 ± 00 of 4 0.16None
Fat body6 ± 40 of 4 0.92None
Ovary2 ± 00 of 4 0.30None
Testis41 ± 54 of 4 5.50Up
Male accessory glands1 ± 00 of 4 0.20None
Virgin spermatheca6 ± 10 of 4 0.89None
Mated spermatheca7 ± 30 of 4 0.96None
Adult carcass1 ± 00 of 4 0.20None
Larval CNS4 ± 20 of 4 0.57None
Larval Salivary gland4 ± 10 of 4 0.53None
Larval midgut2 ± 00 of 4 0.37None
Larval tubule7 ± 30 of 4 1.00None
Larval hindgut2 ± 10 of 4 0.32None
Larval fat body13 ± 40 of 4 1.80None
Larval trachea4 ± 30 of 4 0.55None
Larval carcass3 ± 10 of 4 0.51None
S2 cells (growing)1 ± 00 of 4 0.25None
Whole fly7 ± 20 of 4

Looking for FBgn0040506. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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