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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040507 through 18771 annotations produced 1 hits



ACXD (ACXD):

Annotation Number : CG5712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040507
Gbrowse : chr3L:2237609-2243720 (+) // 100.0 //
Probeset : 1624636_at
Accessions : protein= NP_620469;, nucleotide= NM_138984;
Pathway : 0016021 // integral to membrane // not recorded
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // not re
FlyMine data for FBgn0040507.
BDGP gene expression has embryonic in situ data for ACXD: 11 pix of staining in 3 body parts.
Homophila reports that CG5712 is a close match (3e-16) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).
TRiP has 1 RNAi stocks for FBgn0040507 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040507 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head7 20 of 4 0.30Down
Eye9 04 of 4 0.47Down
Thoracicoabdominal ganglion7 10 of 4 0.40Down
Salivary gland9 20 of 4 0.43Down
Crop4 10 of 4 0.20Down
Midgut118 34 of 4 5.70Up
Tubule118 64 of 4 5.70Up
Hindgut32 14 of 4 1.60Up
Heart5 11 of 4 0.27Down
Fat body11 30 of 4 0.53Down
Ovary5 10 of 4 0.30Down
Testis6 20 of 4 0.30Down
Male accessory glands11 20 of 4 0.50Down
Virgin spermatheca37 44 of 4 1.83Up
Mated spermatheca52 54 of 4 2.54Up
Adult carcass13 40 of 4 0.60None
Larval CNS2 00 of 4 0.13Down
Larval Salivary gland8 10 of 4 0.43Down
Larval midgut97 24 of 4 4.67Up
Larval tubule28 22 of 4 1.30None
Larval hindgut47 24 of 4 2.29Up
Larval fat body55 74 of 4 2.70Up
Larval trachea5 20 of 4 0.25Down
Larval carcass11 20 of 4 0.55Down
S2 cells (growing)5 10 of 4 0.27Down
Whole fly20 03 of 4

Looking for FBgn0040507. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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