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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040508 through 18771 annotations produced 1 hits



ACXC (ACXC):

Annotation Number : CG5983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040508
Gbrowse : chr2L:12912529-12916774 (+) // 100.0 //
Probeset : 1631871_at
Accessions : protein= NP_001033902; /// NP_609593;, nucleotide= NM_001038813; /// NM_135749;
Pathway : 0016021 // integral to membrane // not recorded
Interpro : 0004016 // adenylate cyclase activity // not recorded /// 0004016 // adenylate cyclase activity // inferred from sequenc
FlyMine data for FBgn0040508.
Homophila reports that CG5983 is a close match (7e-15) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).
VDRC has 3 RNAi stocks for FBgn0040508 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 14 of 4 0.40Down
Head1 00 of 4 0.10Down
Eye3 10 of 4 0.09Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland6 20 of 4 0.19Down
Crop5 20 of 4 0.20Down
Midgut3 10 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart3 00 of 4 0.11Down
Fat body9 10 of 4 0.26Down
Ovary0 00 of 4 0.00Down
Testis573 64 of 416.30Up
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca4 10 of 4 0.12Down
Mated spermatheca4 10 of 4 0.13Down
Adult carcass7 20 of 4 0.20Down
Larval CNS4 22 of 4 0.13Down
Larval Salivary gland3 10 of 4 0.10Down
Larval midgut7 10 of 4 0.22Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut2 00 of 4 0.06Down
Larval fat body61 323 of 4 1.70None
Larval trachea6 11 of 4 0.19Down
Larval carcass1 00 of 4 0.05Down
S2 cells (growing)2 10 of 4 0.08Down
Whole fly35 24 of 4

Looking for FBgn0040508. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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