FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040512 through 18771 annotations produced 2 hits

zetaCOP (zetaCOP):

Annotation Number : CG3948
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040512
Gbrowse : chr3L:16665413-16666632 (-) // 100.0 //
Probeset : 1634521_at
Accessions : protein= NP_648910; /// NP_730188; /// NP_730189;, nucleotide= NM_140653; /// NM_168679; /// NM_168680;
Pathway : engulfment // inferred from mutant phenotype /// 0010883 // regulation of lipid storage // inferred from direct assay /
Interpro : 0030126 // COPI vesicle coat // non-traceable author statement
FlyMine data for FBgn0040512.
BDGP gene expression has embryonic in situ data for zetaCOP: 24 pix of staining in 12 body parts.
BioGrid reports that CG3948 interacts with CG6459 .
TRiP has 1 RNAi stocks for FBgn0040512 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040512 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 2	4 of 4	0.50	Down
Head	56 ± 2	4 of 4	1.80	Up
Eye	39 ± 1	4 of 4	1.26	Up
Thoracicoabdominal ganglion	18 ± 1	4 of 4	0.60	Down
Salivary gland	36 ± 3	4 of 4	1.14	None
Crop	142 ± 4	4 of 4	4.50	Up
Midgut	26 ± 4	4 of 4	0.80	None
Tubule	44 ± 2	4 of 4	1.40	Up
Hindgut	97 ± 2	4 of 4	3.10	Up
Heart	76 ± 3	4 of 4	2.44	Up
Fat body	93 ± 9	4 of 4	2.97	Up
Ovary	24 ± 3	4 of 4	0.80	None
Testis	19 ± 1	4 of 4	0.60	Down
Male accessory glands	58 ± 3	4 of 4	1.80	Up
Virgin spermatheca	56 ± 3	4 of 4	1.78	Up
Mated spermatheca	68 ± 7	4 of 4	2.18	Up
Adult carcass	73 ± 5	4 of 4	2.30	Up
Larval CNS	32 ± 2	4 of 4	1.03	None
Larval Salivary gland	64 ± 3	4 of 4	2.03	Up
Larval midgut	17 ± 0	4 of 4	0.54	Down
Larval tubule	40 ± 2	4 of 4	1.30	Up
Larval hindgut	99 ± 5	4 of 4	3.14	Up
Larval fat body	67 ± 4	4 of 4	2.10	Up
Larval trachea	162 ± 38	4 of 4	5.14	Up
Larval carcass	119 ± 6	4 of 4	3.77	Up
S2 cells (growing)	235 ± 8	4 of 4	7.47	Up
Whole fly	31 ± 1	4 of 4

/// zetaCOP (CG5946 /// zetaCOP):

Annotation Number : CG3948
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040512
Gbrowse : chr3L:16664762-16666655 (-) // 100.0 //
Probeset : 1632834_a_at
Accessions : protein= NP_001036600; /// NP_001036601; /// NP_001163421; /// NP_001163422; /// NP_648512; /// NP_648910; /// NP_729751; /// NP_730188; /// NP_730189;, nucleotide= NM_001043135; /// NM_001043136; /// NM_001169950; /// NM_001169951; /// NM_140255; /// NM_140653; /// NM_168479; /// NM_168679; /// NM_168680;
Pathway : engulfment // inferred from mutant phenotype /// 0010883 // regulation of lipid storage // inferred from direct assay /
Interpro : 0030126 // COPI vesicle coat // non-traceable author statement
FlyMine data for FBgn0040512.
BDGP gene expression has embryonic in situ data for zetaCOP: 24 pix of staining in 12 body parts.
BioGrid reports that CG3948 interacts with CG6459 .
TRiP has 1 RNAi stocks for FBgn0040512 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040512 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	380 ± 5	4 of 4	1.00	None
Head	363 ± 20	4 of 4	0.90	None
Eye	319 ± 12	4 of 4	0.82	Down
Thoracicoabdominal ganglion	340 ± 11	4 of 4	0.90	Down
Salivary gland	1943 ± 40	4 of 4	4.96	Up
Crop	381 ± 10	4 of 4	1.00	None
Midgut	642 ± 8	4 of 4	1.60	Up
Tubule	200 ± 9	4 of 4	0.50	Down
Hindgut	438 ± 20	4 of 4	1.10	None
Heart	289 ± 16	4 of 4	0.74	Down
Fat body	263 ± 16	4 of 4	0.67	Down
Ovary	399 ± 14	4 of 4	1.00	None
Testis	292 ± 10	4 of 4	0.70	Down
Male accessory glands	1636 ± 112	4 of 4	4.20	Up
Virgin spermatheca	233 ± 10	4 of 4	0.60	Down
Mated spermatheca	265 ± 29	4 of 4	0.68	Down
Adult carcass	236 ± 8	4 of 4	0.60	Down
Larval CNS	399 ± 16	4 of 4	1.02	None
Larval Salivary gland	2303 ± 120	4 of 4	5.89	Up
Larval midgut	375 ± 11	4 of 4	0.96	None
Larval tubule	536 ± 19	4 of 4	1.40	Up
Larval hindgut	353 ± 17	4 of 4	0.90	None
Larval fat body	448 ± 44	4 of 4	1.10	None
Larval trachea	652 ± 73	4 of 4	1.67	Up
Larval carcass	391 ± 15	4 of 4	1.00	None
S2 cells (growing)	1033 ± 7	4 of 4	2.64	Up
Whole fly	391 ± 4	4 of 4

Looking for FBgn0040512. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720