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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040513 through 18771 annotations produced 2 hits



/// kappaB-Ras (CG30503 /// kappaB-Ras):

Annotation Number : CG30503
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040513 /// FBgn0050503
Gbrowse : chr2R:3331328-3332131 (-) // 99.46 //
Probeset : 1636217_at
Accessions : protein= NP_001137612; /// NP_001137613; /// NP_610278; /// NP_724557;, nucleotide= NM_001144140; /// NM_001144141; /// NM_136434; /// NM_165524;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // inferre
FlyMine data for FBgn0040513 /// FBgn0050503.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 34 of 4 0.70None
Head482 364 of 4 3.80Up
Eye274 304 of 4 2.16Up
Thoracicoabdominal ganglion96 64 of 4 0.80None
Salivary gland30 33 of 4 0.24Down
Crop34 24 of 4 0.30Down
Midgut26 14 of 4 0.20Down
Tubule17 12 of 4 0.10Down
Hindgut70 54 of 4 0.60Down
Heart636 294 of 4 5.01Up
Fat body925 874 of 4 7.28Up
Ovary8 04 of 4 0.10Down
Testis5 00 of 4 0.00Down
Male accessory glands23 34 of 4 0.20Down
Virgin spermatheca279 214 of 4 2.20Up
Mated spermatheca399 324 of 4 3.15Up
Adult carcass512 114 of 4 4.00Up
Larval CNS52 84 of 4 0.41Down
Larval Salivary gland25 23 of 4 0.20Down
Larval midgut10 10 of 4 0.08Down
Larval tubule16 14 of 4 0.10Down
Larval hindgut30 54 of 4 0.24Down
Larval fat body301 264 of 4 2.40Up
Larval trachea34 114 of 4 0.27Down
Larval carcass15 04 of 4 0.12Down
S2 cells (growing)31 14 of 4 0.25Down
Whole fly127 134 of 4



/// kappaB-Ras (CG30503 /// kappaB-Ras):

Annotation Number : CG1669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040513 /// FBgn0050503
Gbrowse : chr2R:3332527-3333266 (-) // 100.0 //
Probeset : 1630406_at
Accessions : protein= NP_001137612; /// NP_001137613; /// NP_610278; /// NP_724557;, nucleotide= NM_001144140; /// NM_001144141; /// NM_136434; /// NM_165524;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004623 // phospholipase A2 activity // inferre
FlyMine data for FBgn0040513 /// FBgn0050503.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 44 of 4 2.40Up
Head48 34 of 4 1.30None
Eye77 44 of 4 2.01Up
Thoracicoabdominal ganglion82 64 of 4 2.10Up
Salivary gland99 84 of 4 2.57Up
Crop60 24 of 4 1.60Up
Midgut49 24 of 4 1.30Up
Tubule37 13 of 4 1.00None
Hindgut54 24 of 4 1.40Up
Heart45 24 of 4 1.18None
Fat body19 30 of 4 0.50Down
Ovary54 34 of 4 1.40Up
Testis22 14 of 4 0.60Down
Male accessory glands126 54 of 4 3.30Up
Virgin spermatheca24 41 of 4 0.63Down
Mated spermatheca35 53 of 4 0.92None
Adult carcass23 10 of 4 0.60Down
Larval CNS52 34 of 4 1.35Up
Larval Salivary gland143 104 of 4 3.71Up
Larval midgut38 24 of 4 0.99None
Larval tubule62 34 of 4 1.60Up
Larval hindgut58 24 of 4 1.52Up
Larval fat body26 22 of 4 0.70Down
Larval trachea90 84 of 4 2.33Up
Larval carcass60 34 of 4 1.56Up
S2 cells (growing)61 14 of 4 1.60Up
Whole fly38 24 of 4

Looking for FBgn0040513. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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