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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040519 through 18771 annotations produced 1 hits



(CG15219):

Annotation Number : CG15219
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040519
Gbrowse : chr2L:22104879-22105506 (-) // 100.0 //
Probeset : 1630663_a_at
Accessions : protein= NP_724378;, nucleotide= NM_165408;
FlyMine data for FBgn0040519.
BioGrid reports that CG15219 interacts with CG15631 CG2109 CG3217 CG7001 .
VDRC has 2 RNAi stocks for FBgn0040519 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head3 20 of 4 0.00Down
Eye1 00 of 4 0.00Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland2 00 of 4 0.00Down
Crop0 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule3 20 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart2 00 of 4 0.00Down
Fat body1 20 of 4 0.00Down
Ovary1 00 of 4 0.00Down
Testis3246 1764 of 4 3.40Up
Male accessory glands0 00 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.00Down
Mated spermatheca9 41 of 4 0.01Down
Adult carcass22 92 of 4 0.00Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland2 00 of 4 0.00Down
Larval midgut4 31 of 4 0.00Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.00Down
Larval fat body702 3454 of 4 0.70None
Larval trachea32 522 of 4 0.03Down
Larval carcass3 10 of 4 0.00Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly952 1104 of 4

Looking for FBgn0040519. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime