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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040528 through 18771 annotations produced 1 hits



(CG15864):

Annotation Number : CG15864
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040528
Gbrowse : chr3R:4073686-4075853 (+) // 100.0 // /// chr3R:4071787-4073384 (+) // 90.42 //
Probeset : 1632759_at
Accessions : protein= NP_652183;, nucleotide= NM_143926;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0005506 // iron ion bi
FlyMine data for FBgn0040528.
VDRC has 1 RNAi stocks for FBgn0040528 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 0.40Down
Head3 11 of 4 0.10Down
Eye2 00 of 4 0.06Down
Thoracicoabdominal ganglion8 22 of 4 0.20Down
Salivary gland15 31 of 4 0.47Down
Crop7 11 of 4 0.20Down
Midgut6 11 of 4 0.20Down
Tubule6 00 of 4 0.20Down
Hindgut4 10 of 4 0.10Down
Heart2 10 of 4 0.08Down
Fat body7 34 of 4 0.23Down
Ovary4 11 of 4 0.10Down
Testis12 24 of 4 0.40Down
Male accessory glands2928 314 of 488.10Up
Virgin spermatheca7 01 of 4 0.23Down
Mated spermatheca8 31 of 4 0.25Down
Adult carcass15 23 of 4 0.50Down
Larval CNS13 24 of 4 0.39Down
Larval Salivary gland7 01 of 4 0.23Down
Larval midgut6 10 of 4 0.18Down
Larval tubule6 13 of 4 0.20Down
Larval hindgut4 00 of 4 0.14Down
Larval fat body10 31 of 4 0.30Down
Larval trachea4 31 of 4 0.15Down
Larval carcass1 00 of 4 0.04Down
S2 cells (growing)10 04 of 4 0.33Down
Whole fly33 34 of 4

Looking for FBgn0040528. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime