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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040529 through 18771 annotations produced 1 hits



Cytochrome c oxidase VIIa (CG9603):

Annotation Number : CG9603
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040529
Gbrowse : chr3R:4165658-4166763 (-) // 100.0 //
Probeset : 1635947_at
Accessions : protein= NP_652184;, nucleotide= NM_143927;
Pathway : cytochrome c to oxygen // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferre
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
FlyMine data for FBgn0040529.
VDRC has 2 RNAi stocks for FBgn0040529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2166 ± 354 of 4 1.10Up
Head2836 ± 1384 of 4 1.50Up
Eye2778 ± 524 of 4 1.45Up
Thoracicoabdominal ganglion3005 ± 804 of 4 1.60Up
Salivary gland6570 ± 1444 of 4 3.43Up
Crop3281 ± 1634 of 4 1.70Up
Midgut3250 ± 1044 of 4 1.70Up
Tubule2952 ± 514 of 4 1.50Up
Hindgut3938 ± 1254 of 4 2.10Up
Heart3043 ± 1284 of 4 1.59Up
Fat body4006 ± 3664 of 4 2.09Up
Ovary1550 ± 234 of 4 0.80Down
Testis809 ± 254 of 4 0.40Down
Male accessory glands2786 ± 354 of 4 1.50Up
Virgin spermatheca4028 ± 1304 of 4 2.10Up
Mated spermatheca3736 ± 314 of 4 1.95Up
Adult carcass3020 ± 1144 of 4 1.60Up
Larval CNS1770 ± 584 of 4 0.92None
Larval Salivary gland3355 ± 654 of 4 1.75Up
Larval midgut4044 ± 794 of 4 2.11Up
Larval tubule3066 ± 1754 of 4 1.60Up
Larval hindgut3630 ± 474 of 4 1.90Up
Larval fat body1425 ± 1164 of 4 0.70Down
Larval trachea1956 ± 1244 of 4 1.02None
Larval carcass3715 ± 3164 of 4 1.94Up
S2 cells (growing)1509 ± 154 of 4 0.79Down
Whole fly1915 ± 674 of 4

Looking for FBgn0040529. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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