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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040531 through 18771 annotations produced 1 hits



(CG11741):

Annotation Number : CT32625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040531
Gbrowse : chr3R:4354396-4354585 (-) // 92.65 //
Probeset : 1633208_at
Accessions : protein= NP_001097709;, nucleotide= NM_001104239;
FlyMine data for FBgn0040531.
VDRC has 1 RNAi stocks for FBgn0040531 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.20None
Head97 ± 234 of 4 2.90None
Eye19 ± 73 of 4 0.58None
Thoracicoabdominal ganglion8 ± 10 of 4 0.30None
Salivary gland16 ± 30 of 4 0.50None
Crop11 ± 10 of 4 0.30None
Midgut71 ± 44 of 4 2.10Up
Tubule55 ± 62 of 4 1.70Up
Hindgut21 ± 24 of 4 0.70None
Heart65 ± 84 of 4 1.96None
Fat body167 ± 84 of 4 5.03Up
Ovary2 ± 10 of 4 0.10None
Testis4 ± 10 of 4 0.10None
Male accessory glands3 ± 00 of 4 0.10None
Virgin spermatheca71 ± 54 of 4 2.14Up
Mated spermatheca98 ± 84 of 4 2.96Up
Adult carcass88 ± 44 of 4 2.70Up
Larval CNS2 ± 10 of 4 0.07None
Larval Salivary gland6 ± 20 of 4 0.20None
Larval midgut45 ± 34 of 4 1.36None
Larval tubule653 ± 574 of 419.60Up
Larval hindgut23 ± 14 of 4 0.69None
Larval fat body10 ± 20 of 4 0.30None
Larval trachea1 ± 00 of 4 0.03None
Larval carcass4 ± 20 of 4 0.15None
S2 cells (growing)2 ± 10 of 4 0.09None
Whole fly33 ± 114 of 4

Looking for FBgn0040531. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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