Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040534 through 18771 annotations produced 1 hits



(CG11985):

Annotation Number : CG11985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040534
Gbrowse : chr3R:4840728-4840986 (-) // 100.0 //
Probeset : 1624847_at
Accessions : protein= NP_652189;, nucleotide= NM_143932;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from elec
FlyMine data for FBgn0040534.
BioGrid reports that CG11985 interacts with CG5466 CG2865 CG3052 CG7937 .
TRiP has 1 RNAi stocks for FBgn0040534 available for purchase.
VDRC has 3 RNAi stocks for FBgn0040534 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain320 144 of 4 1.10None
Head242 114 of 4 0.80None
Eye261 124 of 4 0.90None
Thoracicoabdominal ganglion307 134 of 4 1.10None
Salivary gland245 174 of 4 0.85None
Crop202 114 of 4 0.70Down
Midgut182 44 of 4 0.60Down
Tubule100 24 of 4 0.30Down
Hindgut145 114 of 4 0.50Down
Heart149 44 of 4 0.52Down
Fat body203 184 of 4 0.70Down
Ovary486 94 of 4 1.70Up
Testis246 34 of 4 0.90None
Male accessory glands237 34 of 4 0.80None
Virgin spermatheca182 74 of 4 0.63Down
Mated spermatheca212 94 of 4 0.73Down
Adult carcass117 114 of 4 0.40Down
Larval CNS628 324 of 4 2.17Up
Larval Salivary gland250 94 of 4 0.87None
Larval midgut156 54 of 4 0.54Down
Larval tubule172 84 of 4 0.60Down
Larval hindgut195 84 of 4 0.68Down
Larval fat body219 74 of 4 0.80Down
Larval trachea268 34 of 4 0.93None
Larval carcass182 24 of 4 0.63Down
S2 cells (growing)155 54 of 4 0.54Down
Whole fly289 194 of 4

Looking for FBgn0040534. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime