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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040551 through 18771 annotations produced 1 hits



(CG11686):

Annotation Number : CG11686
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040551
Gbrowse : chr3R:9086078-9087954 (+) // 100.0 //
Probeset : 1634106_at
Accessions : protein= NP_652204;, nucleotide= NM_143947;
FlyMine data for FBgn0040551.
BDGP gene expression has embryonic in situ data for CG11686: 11 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0040551 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 54 of 4 0.60Down
Head234 154 of 4 2.00Up
Eye141 84 of 4 1.22Up
Thoracicoabdominal ganglion142 24 of 4 1.20Up
Salivary gland129 144 of 4 1.12None
Crop385 114 of 4 3.30Up
Midgut300 164 of 4 2.60Up
Tubule383 514 of 4 3.30Up
Hindgut390 144 of 4 3.40Up
Heart309 384 of 4 2.68Up
Fat body131 194 of 4 1.13None
Ovary39 04 of 4 0.30Down
Testis81 24 of 4 0.70Down
Male accessory glands96 34 of 4 0.80Down
Virgin spermatheca277 104 of 4 2.40Up
Mated spermatheca317 384 of 4 2.75Up
Adult carcass319 224 of 4 2.80Up
Larval CNS56 184 of 4 0.49Down
Larval Salivary gland157 174 of 4 1.36None
Larval midgut778 884 of 4 6.73Up
Larval tubule415 134 of 4 3.60Up
Larval hindgut560 544 of 4 4.85Up
Larval fat body692 814 of 4 6.00Up
Larval trachea504 324 of 4 4.36Up
Larval carcass336 634 of 4 2.91Up
S2 cells (growing)144 64 of 4 1.25Up
Whole fly115 44 of 4

Looking for FBgn0040551. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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