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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040553 through 18771 annotations produced 1 hits



/// (CG14374 /// CG14377):

Annotation Number : CG14377
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038148 /// FBgn0040553
Gbrowse : chr3R:9223588-9223906 (+) // 100.0 // /// chr3R:9222530-9222830 (-) // 92.45 //
Probeset : 1625417_s_at
Accessions : protein= NP_731809; /// NP_731810;, nucleotide= NM_169523; /// NM_169524;
FlyMine data for FBgn0038148 /// FBgn0040553.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head29 13 of 4 2.10Up
Eye3 10 of 4 0.27Down
Thoracicoabdominal ganglion9 20 of 4 0.70None
Salivary gland17 30 of 4 1.29None
Crop14 10 of 4 1.00None
Midgut11 20 of 4 0.80None
Tubule3 00 of 4 0.20Down
Hindgut10 20 of 4 0.70None
Heart5 10 of 4 0.37None
Fat body14 40 of 4 1.01None
Ovary5 10 of 4 0.40None
Testis7 01 of 4 0.50None
Male accessory glands20 51 of 4 1.50None
Virgin spermatheca9 30 of 4 0.67None
Mated spermatheca6 10 of 4 0.45None
Adult carcass12 40 of 4 0.90None
Larval CNS6 30 of 4 0.47None
Larval Salivary gland7 30 of 4 0.54None
Larval midgut13 30 of 4 0.97None
Larval tubule16 20 of 4 1.20None
Larval hindgut5 10 of 4 0.42None
Larval fat body9 40 of 4 0.70None
Larval trachea7 20 of 4 0.54None
Larval carcass14 41 of 4 1.04None
S2 cells (growing)12 30 of 4 0.92None
Whole fly13 31 of 4

Looking for FBgn0040553. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime