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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040554 through 18771 annotations produced 1 hits



(CG17025):

Annotation Number : CG17025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040554
Gbrowse : chr3R:9284056-9291828 (-) // 100.0 //
Probeset : 1630876_at
Accessions : protein= NP_652207;, nucleotide= NM_143950;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040554.
VDRC has 2 RNAi stocks for FBgn0040554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 24 of 4 3.60Up
Head8 12 of 4 1.80Up
Eye8 02 of 4 1.84Up
Thoracicoabdominal ganglion41 24 of 4 8.80Up
Salivary gland3 00 of 4 0.64None
Crop3 10 of 4 0.70None
Midgut2 00 of 4 0.60None
Tubule2 00 of 4 0.60Down
Hindgut1 00 of 4 0.30Down
Heart4 01 of 4 1.00None
Fat body7 20 of 4 1.64None
Ovary1 00 of 4 0.20Down
Testis0 00 of 4 0.20Down
Male accessory glands3 10 of 4 0.70None
Virgin spermatheca4 11 of 4 1.02None
Mated spermatheca7 00 of 4 1.58None
Adult carcass5 10 of 4 1.20None
Larval CNS3 11 of 4 0.79None
Larval Salivary gland1 00 of 4 0.28Down
Larval midgut0 00 of 4 0.19Down
Larval tubule4 00 of 4 0.90None
Larval hindgut2 00 of 4 0.52None
Larval fat body9 11 of 4 2.00Up
Larval trachea1 00 of 4 0.21Down
Larval carcass2 00 of 4 0.61None
S2 cells (growing)3 00 of 4 0.65None
Whole fly4 00 of 4

Looking for FBgn0040554. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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