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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040565 through 18771 annotations produced 1 hits



(CG7606):

Annotation Number : CT23217
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040565
Gbrowse : chr3R:13422272-13422648 (+) // 100.0 //
Probeset : 1637846_at
Accessions : protein= NP_001163637;, nucleotide= NM_001170166;
FlyMine data for FBgn0040565.
VDRC has 2 RNAi stocks for FBgn0040565 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 33 of 4 0.80None
Head21 ± 42 of 4 1.10None
Eye8 ± 10 of 4 0.41Down
Thoracicoabdominal ganglion17 ± 20 of 4 0.90None
Salivary gland23 ± 80 of 4 1.21None
Crop21 ± 30 of 4 1.10None
Midgut54 ± 22 of 4 2.80Up
Tubule17 ± 00 of 4 0.90Down
Hindgut24 ± 30 of 4 1.20None
Heart10 ± 10 of 4 0.56Down
Fat body37 ± 23 of 4 1.88Up
Ovary13 ± 10 of 4 0.70None
Testis16 ± 21 of 4 0.90None
Male accessory glands34 ± 30 of 4 1.80Up
Virgin spermatheca36 ± 60 of 4 1.87None
Mated spermatheca44 ± 61 of 4 2.25Up
Adult carcass33 ± 20 of 4 1.70Up
Larval CNS19 ± 33 of 4 0.99None
Larval Salivary gland9558 ± 5564 of 4486.44Up
Larval midgut71 ± 43 of 4 3.63Up
Larval tubule26 ± 50 of 4 1.30None
Larval hindgut24 ± 00 of 4 1.24None
Larval fat body181 ± 574 of 4 9.20None
Larval trachea9 ± 30 of 4 0.49Down
Larval carcass26 ± 53 of 4 1.36None
S2 cells (growing)27 ± 12 of 4 1.38Up
Whole fly19 ± 21 of 4

Looking for FBgn0040565. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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