FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040571 through 18771 annotations produced 1 hits

(CG17193):

Annotation Number : CG17193
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040571
Gbrowse : chr3R:15862141-15881815 (-) // 100.0 //
Probeset : 1630961_at
Accessions : protein= NP_001163659; /// NP_652224;, nucleotide= NM_001170188; /// NM_143967;
FlyMine data for FBgn0040571.
BDGP gene expression has embryonic in situ data for CG17193: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0040571 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	235 ± 10	4 of 4	32.40	Up
Head	53 ± 7	4 of 4	7.40	Up
Eye	43 ± 4	4 of 4	5.97	Up
Thoracicoabdominal ganglion	147 ± 4	4 of 4	20.30	Up
Salivary gland	3 ± 1	0 of 4	0.47	None
Crop	3 ± 1	0 of 4	0.50	None
Midgut	1 ± 0	0 of 4	0.20	Down
Tubule	3 ± 1	0 of 4	0.50	Down
Hindgut	1 ± 0	0 of 4	0.10	Down
Heart	3 ± 1	0 of 4	0.46	None
Fat body	5 ± 3	0 of 4	0.72	None
Ovary	1 ± 0	0 of 4	0.20	Down
Testis	1 ± 0	0 of 4	0.20	Down
Male accessory glands	3 ± 2	0 of 4	0.50	None
Virgin spermatheca	3 ± 1	1 of 4	0.48	None
Mated spermatheca	5 ± 1	0 of 4	0.75	None
Adult carcass	4 ± 2	0 of 4	0.60	None
Larval CNS	108 ± 15	4 of 4	14.97	Up
Larval Salivary gland	3 ± 1	0 of 4	0.41	None
Larval midgut	1 ± 1	0 of 4	0.23	Down
Larval tubule	1 ± 0	0 of 4	0.20	Down
Larval hindgut	1 ± 1	0 of 4	0.24	Down
Larval fat body	2 ± 1	0 of 4	0.30	None
Larval trachea	0 ± 0	0 of 4	0.12	Down
Larval carcass	1 ± 0	0 of 4	0.20	Down
S2 cells (growing)	3 ± 1	0 of 4	0.43	None
Whole fly	7 ± 1	0 of 4

Looking for FBgn0040571. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720