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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040588 through 18771 annotations produced 1 hits



/// (CG13841 /// CG4000):

Annotation Number : CG13841
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040588
Gbrowse : chr3R:18592595-18593404 (-) // 100.0 //
Probeset : 1634201_at
Accessions : protein= NP_652241;, nucleotide= NM_143984;
FlyMine data for FBgn0040588.
VDRC has 1 RNAi stocks for FBgn0040588 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.20Down
Head221 ± 144 of 4 9.40Up
Eye832 ± 334 of 435.36Up
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland6 ± 30 of 4 0.26Down
Crop9 ± 21 of 4 0.40None
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 10 of 4 0.10Down
Heart8 ± 12 of 4 0.35Down
Fat body3 ± 20 of 4 0.14Down
Ovary0 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands10 ± 30 of 4 0.40None
Virgin spermatheca3 ± 10 of 4 0.15Down
Mated spermatheca1 ± 00 of 4 0.05Down
Adult carcass96 ± 54 of 4 4.10Up
Larval CNS1 ± 10 of 4 0.07Down
Larval Salivary gland0 ± 00 of 4 0.03Down
Larval midgut0 ± 00 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea11 ± 171 of 4 0.47None
Larval carcass2 ± 10 of 4 0.11Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly23 ± 44 of 4

Looking for FBgn0040588. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime