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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040601 through 18771 annotations produced 1 hits



(CG13643):

Annotation Number : CG13643
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040601
Gbrowse : chr3R:20723854-20731723 (-) // 100.0 //
Probeset : 1641615_at
Accessions : protein= NP_652253;, nucleotide= NM_143996;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0040601.
BDGP gene expression has embryonic in situ data for CG13643: 14 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0040601 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.70None
Head2 ± 00 of 4 1.00None
Eye3 ± 10 of 4 1.91None
Thoracicoabdominal ganglion1 ± 00 of 4 0.90None
Salivary gland3 ± 10 of 4 1.90None
Crop1 ± 00 of 4 0.80None
Midgut7 ± 10 of 4 3.70Up
Tubule1 ± 00 of 4 0.70Down
Hindgut2 ± 00 of 4 1.40None
Heart1 ± 00 of 4 0.57None
Fat body5 ± 50 of 4 2.87None
Ovary0 ± 00 of 4 0.30None
Testis1 ± 00 of 4 0.50None
Male accessory glands2 ± 00 of 4 1.30None
Virgin spermatheca3 ± 10 of 4 2.04None
Mated spermatheca3 ± 00 of 4 1.56None
Adult carcass3 ± 00 of 4 1.70None
Larval CNS1 ± 00 of 4 0.58None
Larval Salivary gland1 ± 00 of 4 0.74None
Larval midgut3 ± 10 of 4 1.56None
Larval tubule1 ± 00 of 4 0.90None
Larval hindgut5 ± 10 of 4 2.84Up
Larval fat body3 ± 00 of 4 1.70None
Larval trachea3 ± 30 of 4 1.96None
Larval carcass1 ± 00 of 4 0.77None
S2 cells (growing)1 ± 00 of 4 0.87None
Whole fly1 ± 00 of 4

Looking for FBgn0040601. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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