Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040623 through 18771 annotations produced 1 hits



Spase 12-subunit (Spase12):

Annotation Number : CG11500
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040623
Gbrowse : chr3R:25316264-25316816 (-) // 100.0 //
Probeset : 1632479_at
Accessions : protein= NP_788760;, nucleotide= NM_176583;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005787 // signal peptidase complex // infer
Interpro : 0008233 // peptidase activity // inferred from electronic annotation /// 0008233 // peptidase activity // non-traceable
FlyMine data for FBgn0040623.
BDGP gene expression has embryonic in situ data for CG11500: 11 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0040623 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain342 ± 44 of 4 1.00None
Head398 ± 224 of 4 1.20None
Eye311 ± 64 of 4 0.93None
Thoracicoabdominal ganglion365 ± 104 of 4 1.10None
Salivary gland3519 ± 1274 of 410.58Up
Crop375 ± 124 of 4 1.10Up
Midgut494 ± 174 of 4 1.50Up
Tubule509 ± 354 of 4 1.50Up
Hindgut461 ± 124 of 4 1.40Up
Heart382 ± 204 of 4 1.15None
Fat body339 ± 254 of 4 1.02None
Ovary287 ± 124 of 4 0.90Down
Testis288 ± 94 of 4 0.90Down
Male accessory glands3485 ± 974 of 410.50Up
Virgin spermatheca1038 ± 724 of 4 3.12Up
Mated spermatheca1126 ± 1004 of 4 3.38Up
Adult carcass500 ± 334 of 4 1.50Up
Larval CNS424 ± 374 of 4 1.28Up
Larval Salivary gland3625 ± 774 of 410.90Up
Larval midgut324 ± 24 of 4 0.97None
Larval tubule435 ± 54 of 4 1.30Up
Larval hindgut394 ± 144 of 4 1.19Up
Larval fat body551 ± 564 of 4 1.70Up
Larval trachea487 ± 844 of 4 1.47Up
Larval carcass510 ± 374 of 4 1.53Up
S2 cells (growing)1279 ± 164 of 4 3.85Up
Whole fly332 ± 94 of 4

Looking for FBgn0040623. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime