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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040648 through 18771 annotations produced 1 hits



(CG11666):

Annotation Number : CG11666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040648
Gbrowse : chrX:20855747-20856038 (+) // 100.0 //
Probeset : 1636021_at
Accessions : protein= NP_728377;, nucleotide= NM_167721;
FlyMine data for FBgn0040648.
VDRC has 3 RNAi stocks for FBgn0040648 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.20Down
Head3 ± 10 of 4 0.20Down
Eye4 ± 10 of 4 0.28Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.20Down
Salivary gland6 ± 10 of 4 0.37Down
Crop2 ± 00 of 4 0.20Down
Midgut3 ± 10 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.20Down
Heart3 ± 10 of 4 0.21Down
Fat body6 ± 41 of 4 0.36Down
Ovary0 ± 00 of 4 0.10Down
Testis267 ± 174 of 415.90Up
Male accessory glands6 ± 20 of 4 0.40Down
Virgin spermatheca4 ± 10 of 4 0.25Down
Mated spermatheca4 ± 21 of 4 0.28Down
Adult carcass3 ± 10 of 4 0.20Down
Larval CNS1 ± 20 of 4 0.12Down
Larval Salivary gland2 ± 10 of 4 0.12Down
Larval midgut4 ± 10 of 4 0.27Down
Larval tubule4 ± 11 of 4 0.30Down
Larval hindgut2 ± 10 of 4 0.13Down
Larval fat body18 ± 81 of 4 1.10None
Larval trachea3 ± 20 of 4 0.20Down
Larval carcass1 ± 00 of 4 0.11Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly16 ± 24 of 4

Looking for FBgn0040648. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime