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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040649 through 18771 annotations produced 1 hits



(CG15461):

Annotation Number : CG15461
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040649
Gbrowse : chrX:20357206-20357634 (+) // 100.0 //
Probeset : 1634427_at
Accessions : protein= NP_652291;, nucleotide= NM_144034;
FlyMine data for FBgn0040649.
VDRC has 1 RNAi stocks for FBgn0040649 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 12 of 4 0.10Down
Head12 ± 23 of 4 0.20Down
Eye8 ± 24 of 4 0.11Down
Thoracicoabdominal ganglion9 ± 12 of 4 0.10Down
Salivary gland16 ± 10 of 4 0.22Down
Crop10 ± 03 of 4 0.10Down
Midgut15 ± 13 of 4 0.20Down
Tubule10 ± 01 of 4 0.10Down
Hindgut12 ± 13 of 4 0.20Down
Heart8 ± 21 of 4 0.11Down
Fat body7 ± 21 of 4 0.10Down
Ovary4 ± 00 of 4 0.10Down
Testis863 ± 244 of 411.30Up
Male accessory glands11 ± 22 of 4 0.20Down
Virgin spermatheca9 ± 12 of 4 0.12Down
Mated spermatheca6 ± 22 of 4 0.09Down
Adult carcass14 ± 41 of 4 0.20Down
Larval CNS6 ± 23 of 4 0.08Down
Larval Salivary gland5 ± 11 of 4 0.07Down
Larval midgut9 ± 04 of 4 0.13Down
Larval tubule9 ± 11 of 4 0.10Down
Larval hindgut8 ± 03 of 4 0.12Down
Larval fat body95 ± 493 of 4 1.30None
Larval trachea10 ± 63 of 4 0.14Down
Larval carcass10 ± 14 of 4 0.14Down
S2 cells (growing)4 ± 00 of 4 0.06Down
Whole fly76 ± 114 of 4

Looking for FBgn0040649. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime