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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040650 through 18771 annotations produced 1 hits



(CG15456):

Annotation Number : CG15456
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040650
Gbrowse : chrX:20297672-20298017 (-) // 100.0 //
Probeset : 1625166_at
Accessions : protein= NP_652292;, nucleotide= NM_144035;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008430 // selenium binding // inferred from electr
FlyMine data for FBgn0040650.
BioGrid reports that CG15456 interacts with CG9610 .
VDRC has 2 RNAi stocks for FBgn0040650 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 ± 14 of 4 2.10Up
Head74 ± 64 of 4 1.10None
Eye75 ± 14 of 4 1.12None
Thoracicoabdominal ganglion144 ± 64 of 4 2.20Up
Salivary gland23 ± 40 of 4 0.36Down
Crop37 ± 34 of 4 0.60Down
Midgut31 ± 20 of 4 0.50Down
Tubule27 ± 13 of 4 0.40Down
Hindgut50 ± 44 of 4 0.80Down
Heart53 ± 34 of 4 0.80Down
Fat body21 ± 30 of 4 0.32Down
Ovary81 ± 14 of 4 1.20Up
Testis36 ± 34 of 4 0.50Down
Male accessory glands20 ± 50 of 4 0.30Down
Virgin spermatheca17 ± 10 of 4 0.26Down
Mated spermatheca17 ± 21 of 4 0.27Down
Adult carcass63 ± 54 of 4 0.90None
Larval CNS77 ± 84 of 4 1.16None
Larval Salivary gland25 ± 22 of 4 0.38Down
Larval midgut16 ± 40 of 4 0.24Down
Larval tubule16 ± 13 of 4 0.30Down
Larval hindgut36 ± 44 of 4 0.54Down
Larval fat body29 ± 34 of 4 0.40Down
Larval trachea39 ± 44 of 4 0.59Down
Larval carcass49 ± 34 of 4 0.75Down
S2 cells (growing)25 ± 14 of 4 0.39Down
Whole fly66 ± 44 of 4

Looking for FBgn0040650. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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