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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040658 through 18771 annotations produced 1 hits



(CG13516):

Annotation Number : CT32887
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040658
Gbrowse : chr2R:18557104-18557368 (+) // 100.0 //
Probeset : 1638764_at
Accessions : protein= NP_001033966;, nucleotide= NM_001038877;
FlyMine data for FBgn0040658.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.20Down
Head27 ± 43 of 4 1.40None
Eye13 ± 23 of 4 0.68None
Thoracicoabdominal ganglion9 ± 20 of 4 0.50Down
Salivary gland7 ± 20 of 4 0.40Down
Crop167 ± 64 of 4 8.60Up
Midgut20 ± 43 of 4 1.00None
Tubule86 ± 04 of 4 4.50Up
Hindgut151 ± 104 of 4 7.80Up
Heart43 ± 34 of 4 2.23Up
Fat body85 ± 144 of 4 4.37Up
Ovary4 ± 00 of 4 0.20Down
Testis11 ± 03 of 4 0.60Down
Male accessory glands12 ± 20 of 4 0.70None
Virgin spermatheca9 ± 10 of 4 0.49Down
Mated spermatheca10 ± 20 of 4 0.56Down
Adult carcass45 ± 63 of 4 2.40Up
Larval CNS8 ± 00 of 4 0.45Down
Larval Salivary gland40 ± 44 of 4 2.10Up
Larval midgut13 ± 50 of 4 0.66None
Larval tubule669 ± 104 of 434.40Up
Larval hindgut61 ± 34 of 4 3.14Up
Larval fat body7 ± 10 of 4 0.40Down
Larval trachea33 ± 44 of 4 1.72Up
Larval carcass28 ± 14 of 4 1.48Up
S2 cells (growing)1 ± 00 of 4 0.08Down
Whole fly19 ± 23 of 4

Looking for FBgn0040658. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime