Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040660 through 18771 annotations produced 2 hits



(CG13551):

Annotation Number : CG13551
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040660
Gbrowse : chr2R:19265382-19270852 (-) // 100.0 //
Probeset : 1626735_at
Accessions : protein= NP_652302; /// NP_726315; /// NP_726316;, nucleotide= NM_144045; /// NM_166597; /// NM_166598;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation
Interpro : 0004857 // enzyme inhibitor activity // inferred from electronic annotation
FlyMine data for FBgn0040660.
BDGP gene expression has embryonic in situ data for CG13551: 13 pix of staining in 10 body parts.
BioGrid reports that CG13551 interacts with CG1681 CG18617 .
TRiP has 1 RNAi stocks for FBgn0040660 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.50Down
Head2 ± 10 of 4 0.50None
Eye4 ± 11 of 4 0.83None
Thoracicoabdominal ganglion3 ± 10 of 4 0.70None
Salivary gland9 ± 50 of 4 1.84None
Crop8 ± 30 of 4 1.70None
Midgut8 ± 21 of 4 1.70None
Tubule2 ± 00 of 4 0.50Down
Hindgut15 ± 14 of 4 3.20Up
Heart5 ± 01 of 4 1.11None
Fat body4 ± 40 of 4 0.95None
Ovary3 ± 10 of 4 0.70None
Testis8 ± 03 of 4 1.70Up
Male accessory glands6 ± 10 of 4 1.40None
Virgin spermatheca4 ± 10 of 4 0.86None
Mated spermatheca2 ± 00 of 4 0.55None
Adult carcass6 ± 10 of 4 1.40None
Larval CNS3 ± 10 of 4 0.76None
Larval Salivary gland22 ± 04 of 4 4.64Up
Larval midgut19 ± 14 of 4 3.99Up
Larval tubule25 ± 14 of 4 5.20Up
Larval hindgut18 ± 14 of 4 3.66Up
Larval fat body12 ± 20 of 4 2.60Up
Larval trachea5 ± 20 of 4 1.12None
Larval carcass38 ± 84 of 4 7.90Up
S2 cells (growing)2 ± 00 of 4 0.47None
Whole fly4 ± 00 of 4



(CG13551):

Annotation Number : CG13551
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040660
Gbrowse : chr2R:19265382-19270944 (-) // 100.0 //
Probeset : 1629019_s_at
Accessions : protein= NP_652302; /// NP_726315; /// NP_726316;, nucleotide= NM_144045; /// NM_166597; /// NM_166598;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation
Interpro : 0004857 // enzyme inhibitor activity // inferred from electronic annotation
FlyMine data for FBgn0040660.
BDGP gene expression has embryonic in situ data for CG13551: 13 pix of staining in 10 body parts.
BioGrid reports that CG13551 interacts with CG1681 CG18617 .
TRiP has 1 RNAi stocks for FBgn0040660 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1064 ± 134 of 4 0.60Down
Head1617 ± 554 of 4 1.00None
Eye1356 ± 384 of 4 0.80Down
Thoracicoabdominal ganglion1037 ± 234 of 4 0.60Down
Salivary gland4269 ± 1274 of 4 2.53Up
Crop1975 ± 534 of 4 1.20Up
Midgut2555 ± 394 of 4 1.50Up
Tubule1563 ± 394 of 4 0.90Down
Hindgut3761 ± 494 of 4 2.20Up
Heart1564 ± 314 of 4 0.93None
Fat body1808 ± 684 of 4 1.07None
Ovary1662 ± 234 of 4 1.00None
Testis1016 ± 284 of 4 0.60Down
Male accessory glands1970 ± 484 of 4 1.20Up
Virgin spermatheca2775 ± 844 of 4 1.65Up
Mated spermatheca2519 ± 1234 of 4 1.49Up
Adult carcass1391 ± 404 of 4 0.80Down
Larval CNS1836 ± 634 of 4 1.09Up
Larval Salivary gland4487 ± 724 of 4 2.66Up
Larval midgut3981 ± 864 of 4 2.36Up
Larval tubule3062 ± 834 of 4 1.80Up
Larval hindgut3882 ± 354 of 4 2.30Up
Larval fat body3584 ± 4334 of 4 2.10Up
Larval trachea2451 ± 514 of 4 1.45Up
Larval carcass3479 ± 1994 of 4 2.06Up
S2 cells (growing)1691 ± 384 of 4 1.00None
Whole fly1687 ± 444 of 4

Looking for FBgn0040660. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime