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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040674 through 18771 annotations produced 1 hits


Annotation Number : CG9445
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040674
Gbrowse : chr2R:2725578-2726432 (-) // 100.0 //
Probeset : 1625783_at
Accessions : protein= NP_652314;, nucleotide= NM_144057;
FlyMine data for FBgn0040674.
VDRC has 2 RNAi stocks for FBgn0040674 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 33 of 4 0.80None
Head12 23 of 4 0.90None
Eye12 13 of 4 0.92None
Thoracicoabdominal ganglion17 14 of 4 1.20None
Salivary gland8 30 of 4 0.57None
Crop5 00 of 4 0.40Down
Midgut4 00 of 4 0.30Down
Tubule3 00 of 4 0.30Down
Hindgut2 10 of 4 0.20Down
Heart2 00 of 4 0.18Down
Fat body9 21 of 4 0.66Down
Ovary3 00 of 4 0.20Down
Testis113 34 of 4 8.10Up
Male accessory glands11 11 of 4 0.80None
Virgin spermatheca3 00 of 4 0.25Down
Mated spermatheca5 00 of 4 0.36Down
Adult carcass10 31 of 4 0.70None
Larval CNS12 14 of 4 0.88None
Larval Salivary gland7 21 of 4 0.51None
Larval midgut4 10 of 4 0.29Down
Larval tubule4 10 of 4 0.30Down
Larval hindgut3 10 of 4 0.22Down
Larval fat body25 72 of 4 1.80None
Larval trachea4 21 of 4 0.33Down
Larval carcass1 00 of 4 0.10Down
S2 cells (growing)2 00 of 4 0.21Down
Whole fly14 14 of 4

Looking for FBgn0040674. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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