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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040694 through 18771 annotations produced 1 hits


(CG14974):

Annotation Number : CG14974
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040694
Gbrowse : chr3L:3620475-3620999 (-) // 100.0 //
Probeset : 1627642_at
Accessions : protein= NP_652332;, nucleotide= NM_144075;
FlyMine data for FBgn0040694.
VDRC has 1 RNAi stocks for FBgn0040694 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 10 of 4 0.00Down
Salivary gland11 ± 51 of 4 0.10Down
Crop6 ± 01 of 4 0.00Down
Midgut6 ± 12 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut3 ± 11 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body1 ± 10 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis1086 ± 254 of 4 9.00Up
Male accessory glands8 ± 20 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca2 ± 00 of 4 0.02Down
Adult carcass5 ± 10 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland0 ± 00 of 4 0.00Down
Larval midgut3 ± 00 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut6 ± 02 of 4 0.05Down
Larval fat body69 ± 253 of 4 0.60None
Larval trachea5 ± 61 of 4 0.04Down
Larval carcass6 ± 11 of 4 0.05Down
S2 cells (growing)3 ± 00 of 4 0.03Down
Whole fly121 ± 64 of 4

Looking for FBgn0040694. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime