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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040697 through 18771 annotations produced 1 hits



tipE homolog 3 (Teh3):

Annotation Number : CG18676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040697
Gbrowse : chr3L:4183316-4184663 (-) // 100.0 //
Probeset : 1635924_at
Accessions : protein= NP_652335;, nucleotide= NM_144078;
Pathway : 0005840 // ribosome // inferred from electronic annotation /// 0016021 // integral to membrane // not recorded
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation
FlyMine data for FBgn0040697.
VDRC has 3 RNAi stocks for FBgn0040697 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain133 64 of 4 7.50Up
Head41 74 of 4 2.40Up
Eye50 34 of 4 2.87Up
Thoracicoabdominal ganglion136 194 of 4 7.70Up
Salivary gland12 30 of 4 0.72None
Crop19 30 of 4 1.10None
Midgut31 14 of 4 1.80Up
Tubule12 11 of 4 0.70Down
Hindgut22 11 of 4 1.30None
Heart9 04 of 4 0.55Down
Fat body11 40 of 4 0.66None
Ovary8 10 of 4 0.50Down
Testis13 12 of 4 0.70None
Male accessory glands9 20 of 4 0.50Down
Virgin spermatheca11 30 of 4 0.65None
Mated spermatheca8 12 of 4 0.50Down
Adult carcass33 44 of 4 1.90Up
Larval CNS28 44 of 4 1.64Up
Larval Salivary gland10 10 of 4 0.58Down
Larval midgut20 20 of 4 1.16None
Larval tubule16 21 of 4 0.90None
Larval hindgut17 23 of 4 1.00None
Larval fat body23 62 of 4 1.40None
Larval trachea6 30 of 4 0.34Down
Larval carcass37 24 of 4 2.14Up
S2 cells (growing)11 13 of 4 0.64None
Whole fly17 24 of 4

Looking for FBgn0040697. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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