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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040717 through 18771 annotations produced 2 hits



neuropeptide-like precursor 4 (Nplp4):

Annotation Number : CG15361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040717
Gbrowse : chr2L:2008529-2008855 (+) // 100.0 //
Probeset : 1624362_at
Accessions : protein= NP_652352;, nucleotide= NM_144095;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005184 // neuropeptide hormone activity // non-traceable author statement
FlyMine data for FBgn0040717.
BioGrid reports that CG15361 interacts with CG9986 .
TRiP has 1 RNAi stocks for FBgn0040717 available for purchase.
VDRC has 4 RNAi stocks for FBgn0040717 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 04 of 4 0.90None
Head69 ± 124 of 4 3.20Up
Eye2539 ± 7364 of 4116.22Up
Thoracicoabdominal ganglion20 ± 13 of 4 0.90None
Salivary gland99 ± 153 of 4 4.54Up
Crop50 ± 64 of 4 2.30Up
Midgut26 ± 30 of 4 1.20None
Tubule14 ± 41 of 4 0.60None
Hindgut118 ± 24 of 4 5.40Up
Heart140 ± 584 of 4 6.42None
Fat body51 ± 114 of 4 2.34Up
Ovary4 ± 10 of 4 0.20Down
Testis6 ± 20 of 4 0.30Down
Male accessory glands4 ± 10 of 4 0.20Down
Virgin spermatheca33 ± 24 of 4 1.51None
Mated spermatheca42 ± 44 of 4 1.93Up
Adult carcass85 ± 54 of 4 3.90Up
Larval CNS636 ± 3064 of 429.14Up
Larval Salivary gland2749 ± 5064 of 4125.82Up
Larval midgut163 ± 214 of 4 7.50Up
Larval tubule12 ± 10 of 4 0.60None
Larval hindgut405 ± 244 of 418.58Up
Larval fat body35 ± 44 of 4 1.60None
Larval trachea5890 ± 6244 of 4269.57Up
Larval carcass1408 ± 1044 of 464.46Up
S2 cells (growing)13 ± 00 of 4 0.61None
Whole fly21 ± 44 of 4



(CG4238):

Annotation Number : Stencil:2L:2010532:2017502:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031384 /// FBgn0040717
Gbrowse : chr2L:2008867-2015837 (+) // 100.0 //
Probeset : 1636665_at
Accessions : protein= NP_001097052; /// NP_001097053; /// NP_608640;, nucleotide= NM_001103582; /// NM_001103583; /// NM_134796;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // non-tracea
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0031384 /// FBgn0040717.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 4.10None
Head2 ± 00 of 4 1.90None
Eye3 ± 10 of 4 3.00None
Thoracicoabdominal ganglion7 ± 20 of 4 7.30None
Salivary gland8 ± 40 of 4 8.17None
Crop4 ± 20 of 4 4.70None
Midgut3 ± 00 of 4 3.50Up
Tubule6 ± 10 of 4 6.00Up
Hindgut3 ± 10 of 4 3.30None
Heart2 ± 10 of 4 2.83None
Fat body6 ± 70 of 4 6.41None
Ovary3 ± 10 of 4 2.90None
Testis5 ± 10 of 4 5.10None
Male accessory glands10 ± 30 of 410.50None
Virgin spermatheca11 ± 10 of 411.39Up
Mated spermatheca13 ± 20 of 413.07Up
Adult carcass10 ± 20 of 410.60Up
Larval CNS2 ± 00 of 4 2.10Up
Larval Salivary gland2 ± 00 of 4 2.05Up
Larval midgut3 ± 10 of 4 2.95None
Larval tubule3 ± 00 of 4 3.80Up
Larval hindgut5 ± 10 of 4 5.41Up
Larval fat body2 ± 00 of 4 2.30Up
Larval trachea5 ± 30 of 4 5.61None
Larval carcass2 ± 00 of 4 2.22None
S2 cells (growing)2 ± 10 of 4 2.37None
Whole fly1 ± 00 of 4

Looking for FBgn0040717. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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