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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040718 through 18771 annotations produced 1 hits



(CG15353):

Annotation Number : CG15353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040718
Gbrowse : chr2L:2006753-2007193 (-) // 100.0 //
Probeset : 1626439_at
Accessions : protein= NP_652353;, nucleotide= NM_144096;
FlyMine data for FBgn0040718.
VDRC has 3 RNAi stocks for FBgn0040718 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 14 of 4 0.30Down
Head231 ± 304 of 4 3.20Up
Eye3082 ± 9034 of 442.19Up
Thoracicoabdominal ganglion103 ± 14 of 4 1.40Up
Salivary gland397 ± 394 of 4 5.44Up
Crop110 ± 134 of 4 1.50None
Midgut68 ± 54 of 4 0.90None
Tubule40 ± 93 of 4 0.60Down
Hindgut960 ± 694 of 413.10Up
Heart345 ± 674 of 4 4.72Up
Fat body307 ± 774 of 4 4.20Up
Ovary23 ± 14 of 4 0.30Down
Testis42 ± 24 of 4 0.60Down
Male accessory glands43 ± 74 of 4 0.60Down
Virgin spermatheca103 ± 44 of 4 1.41Up
Mated spermatheca104 ± 64 of 4 1.43Up
Adult carcass364 ± 284 of 4 5.00Up
Larval CNS1581 ± 2064 of 421.64Up
Larval Salivary gland5005 ± 2194 of 468.52Up
Larval midgut258 ± 834 of 4 3.54None
Larval tubule19 ± 83 of 4 0.30Down
Larval hindgut1750 ± 1384 of 423.96Up
Larval fat body315 ± 644 of 4 4.30Up
Larval trachea6498 ± 6544 of 488.95Up
Larval carcass3738 ± 2254 of 451.18Up
S2 cells (growing)12 ± 14 of 4 0.18Down
Whole fly73 ± 04 of 4

Looking for FBgn0040718. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime