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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040719 through 18771 annotations produced 1 hits


Annotation Number : CG15357
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040719
Gbrowse : chr2L:1945304-1945589 (-) // 100.0 //
Probeset : 1629041_at
Accessions : protein= NP_652354;, nucleotide= NM_144097;
FlyMine data for FBgn0040719.
VDRC has 3 RNAi stocks for FBgn0040719 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 03 of 4 0.20Down
Head7 01 of 4 0.20Down
Eye3 00 of 4 0.11Down
Thoracicoabdominal ganglion5 21 of 4 0.20Down
Salivary gland12 10 of 4 0.35Down
Crop8 11 of 4 0.20Down
Midgut9 22 of 4 0.30Down
Tubule4 00 of 4 0.10Down
Hindgut8 14 of 4 0.20Down
Heart2 00 of 4 0.06Down
Fat body7 12 of 4 0.20Down
Ovary4 01 of 4 0.10Down
Testis349 64 of 4 9.80Up
Male accessory glands10 20 of 4 0.30Down
Virgin spermatheca6 02 of 4 0.18Down
Mated spermatheca5 10 of 4 0.15Down
Adult carcass10 21 of 4 0.30Down
Larval CNS4 03 of 4 0.14Down
Larval Salivary gland4 10 of 4 0.13Down
Larval midgut14 04 of 4 0.39Down
Larval tubule5 10 of 4 0.20Down
Larval hindgut8 14 of 4 0.25Down
Larval fat body76 313 of 4 2.20None
Larval trachea6 11 of 4 0.17Down
Larval carcass9 01 of 4 0.27Down
S2 cells (growing)4 02 of 4 0.14Down
Whole fly35 34 of 4

Looking for FBgn0040719. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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