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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040723 through 18771 annotations produced 1 hits



(CG5011):

Annotation Number : CG5011
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040723
Gbrowse : chr2L:1200236-1201220 (+) // 100.0 //
Probeset : 1634657_at
Accessions : protein= NP_652358;, nucleotide= NM_144101;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040723.
BioGrid reports that CG5011 interacts with CG6196 .
VDRC has 2 RNAi stocks for FBgn0040723 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye7 ± 11 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland11 ± 40 of 4 0.08Down
Crop5 ± 20 of 4 0.00Down
Midgut1245 ± 414 of 4 8.50Up
Tubule45 ± 73 of 4 0.30Down
Hindgut204 ± 54 of 4 1.40Up
Heart3 ± 10 of 4 0.03Down
Fat body5 ± 30 of 4 0.04Down
Ovary1 ± 00 of 4 0.00Down
Testis4 ± 10 of 4 0.00Down
Male accessory glands3 ± 00 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.02Down
Mated spermatheca3 ± 10 of 4 0.02Down
Adult carcass4 ± 20 of 4 0.00Down
Larval CNS4 ± 20 of 4 0.03Down
Larval Salivary gland8 ± 30 of 4 0.06Down
Larval midgut906 ± 984 of 4 6.20Up
Larval tubule25 ± 73 of 4 0.20Down
Larval hindgut257 ± 104 of 4 1.76Up
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea2 ± 20 of 4 0.02Down
Larval carcass2 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly146 ± 44 of 4

Looking for FBgn0040723. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime