FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040725 through 18771 annotations produced 1 hits

(CG13946):

Annotation Number : CG13946
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040725
Gbrowse : chr2L:776535-776892 (+) // 100.0 //
Probeset : 1639236_at
Accessions : protein= NP_652360;, nucleotide= NM_144103;
FlyMine data for FBgn0040725.
VDRC has 2 RNAi stocks for FBgn0040725 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	1 of 4	0.10	Down
Head	5 ± 1	3 of 4	0.20	Down
Eye	3 ± 1	1 of 4	0.14	Down
Thoracicoabdominal ganglion	5 ± 0	3 of 4	0.20	Down
Salivary gland	846 ± 261	4 of 4	32.26	None
Crop	6 ± 1	3 of 4	0.20	None
Midgut	4 ± 0	1 of 4	0.20	Down
Tubule	2 ± 0	0 of 4	0.10	Down
Hindgut	5 ± 1	2 of 4	0.20	Down
Heart	2 ± 0	0 of 4	0.08	Down
Fat body	4 ± 2	2 of 4	0.17	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	345 ± 32	4 of 4	13.20	Up
Male accessory glands	9 ± 1	2 of 4	0.40	None
Virgin spermatheca	6 ± 1	1 of 4	0.26	None
Mated spermatheca	2 ± 0	0 of 4	0.10	Down
Adult carcass	11 ± 6	1 of 4	0.40	None
Larval CNS	2 ± 1	1 of 4	0.10	Down
Larval Salivary gland	100 ± 64	3 of 4	3.81	None
Larval midgut	5 ± 0	2 of 4	0.22	None
Larval tubule	1 ± 0	0 of 4	0.10	Down
Larval hindgut	3 ± 1	1 of 4	0.13	Down
Larval fat body	3 ± 1	0 of 4	0.10	Down
Larval trachea	3 ± 2	0 of 4	0.12	Down
Larval carcass	3 ± 0	0 of 4	0.13	Down
S2 cells (growing)	3 ± 0	1 of 4	0.14	Down
Whole fly	26 ± 6	4 of 4

Looking for FBgn0040725. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720