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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040726 through 18771 annotations produced 3 hits



defective proboscis extension response (dpr):

Annotation Number : HDC07559
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040726
Gbrowse : chr2R:16621672-16622454 (+) // 95.54 //
Probeset : 1625460_s_at
Accessions : protein= NP_995908;, nucleotide= NM_206186;
FlyMine data for FBgn0040726.
VDRC has 2 RNAi stocks for FBgn0040726 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 11 of 4 8.20Up
Head3 10 of 4 1.80None
Eye2 10 of 4 1.50None
Thoracicoabdominal ganglion10 20 of 4 5.50Up
Salivary gland8 20 of 4 4.54None
Crop2 10 of 4 1.20None
Midgut1 00 of 4 0.90None
Tubule1 00 of 4 0.70Down
Hindgut2 00 of 4 1.10None
Heart1 10 of 4 0.91None
Fat body3 30 of 4 2.01None
Ovary1 00 of 4 0.70None
Testis3 10 of 4 1.60None
Male accessory glands3 00 of 4 1.90None
Virgin spermatheca1 00 of 4 0.55None
Mated spermatheca2 00 of 4 1.42None
Adult carcass2 00 of 4 1.10None
Larval CNS4 10 of 4 2.13None
Larval Salivary gland1 00 of 4 1.00None
Larval midgut1 00 of 4 0.70None
Larval tubule1 00 of 4 0.60None
Larval hindgut0 00 of 4 0.47None
Larval fat body7 30 of 4 4.00None
Larval trachea1 00 of 4 0.68None
Larval carcass3 10 of 4 1.88None
S2 cells (growing)1 00 of 4 0.57None
Whole fly1 00 of 4



defective proboscis extension response (dpr):

Annotation Number : CT32797
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040726
Gbrowse : chr2R:16613456-16613724 (+) // 100.0 //
Probeset : 1627071_at
Accessions : protein= NP_995908;, nucleotide= NM_206186;
FlyMine data for FBgn0040726.
VDRC has 2 RNAi stocks for FBgn0040726 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 04 of 4 9.30Up
Head1 00 of 4 0.80None
Eye2 00 of 4 1.67None
Thoracicoabdominal ganglion5 20 of 4 3.80None
Salivary gland6 30 of 4 4.54None
Crop1 00 of 4 1.00None
Midgut9 20 of 4 6.20Up
Tubule2 00 of 4 1.40None
Hindgut4 00 of 4 2.60None
Heart3 10 of 4 2.02None
Fat body2 20 of 4 1.90None
Ovary0 00 of 4 0.50None
Testis2 00 of 4 1.30None
Male accessory glands10 30 of 4 7.10None
Virgin spermatheca1 00 of 4 0.70None
Mated spermatheca2 10 of 4 1.39None
Adult carcass2 00 of 4 1.50None
Larval CNS1 10 of 4 1.08None
Larval Salivary gland6 20 of 4 4.51None
Larval midgut6 20 of 4 4.30None
Larval tubule3 10 of 4 2.40None
Larval hindgut1 00 of 4 1.07None
Larval fat body7 20 of 4 5.20None
Larval trachea2 10 of 4 1.34None
Larval carcass4 10 of 4 2.70None
S2 cells (growing)0 00 of 4 0.61None
Whole fly1 00 of 4



defective proboscis extension response (dpr):

Annotation Number : Stencil:2R:15794719:15799500:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040726
Gbrowse : chr2R:16618512-16623293 (+) // 100.0 //
Probeset : 1638552_at
Accessions : protein= NP_995908;, nucleotide= NM_206186;
FlyMine data for FBgn0040726.
VDRC has 2 RNAi stocks for FBgn0040726 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 22 of 419.50Up
Head2 00 of 4 4.00None
Eye2 10 of 4 5.38None
Thoracicoabdominal ganglion4 10 of 4 8.10Up
Salivary gland2 00 of 4 4.00Up
Crop1 00 of 4 2.70Up
Midgut2 10 of 4 3.80None
Tubule1 00 of 4 3.70Up
Hindgut2 10 of 4 4.30None
Heart2 10 of 4 4.76None
Fat body4 20 of 4 8.24None
Ovary0 00 of 4 0.70None
Testis0 00 of 4 1.50None
Male accessory glands1 00 of 4 3.10None
Virgin spermatheca4 00 of 4 7.52Up
Mated spermatheca5 20 of 410.62None
Adult carcass2 00 of 4 4.10Up
Larval CNS2 10 of 4 5.67Up
Larval Salivary gland2 00 of 4 5.29None
Larval midgut3 10 of 4 6.86None
Larval tubule0 00 of 4 1.50None
Larval hindgut1 00 of 4 3.57None
Larval fat body4 10 of 4 7.50None
Larval trachea3 20 of 4 5.86None
Larval carcass2 00 of 4 3.81None
S2 cells (growing)0 00 of 4 0.95None
Whole fly0 00 of 4

Looking for FBgn0040726. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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