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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040730 through 18771 annotations produced 1 hits



(CG15127):

Annotation Number : CG15127
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040730
Gbrowse : chr2R:15568523-15568781 (-) // 100.0 //
Probeset : 1634878_at
Accessions : protein= NP_663310;, nucleotide= NM_145337;
FlyMine data for FBgn0040730.
VDRC has 3 RNAi stocks for FBgn0040730 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 11 of 4 0.40Down
Head8 11 of 4 0.40None
Eye10 00 of 4 0.53None
Thoracicoabdominal ganglion5 10 of 4 0.30Down
Salivary gland30 41 of 4 1.59None
Crop10 30 of 4 0.50None
Midgut239 94 of 412.50Up
Tubule10 10 of 4 0.50Down
Hindgut8 30 of 4 0.50None
Heart14 12 of 4 0.75None
Fat body25 44 of 4 1.34None
Ovary6 10 of 4 0.30Down
Testis6 10 of 4 0.30Down
Male accessory glands12 31 of 4 0.70None
Virgin spermatheca11 21 of 4 0.58None
Mated spermatheca10 20 of 4 0.52None
Adult carcass11 31 of 4 0.60None
Larval CNS7 13 of 4 0.41None
Larval Salivary gland14 40 of 4 0.77None
Larval midgut288 341 of 415.03Up
Larval tubule9 20 of 4 0.50None
Larval hindgut17 34 of 4 0.91None
Larval fat body10 30 of 4 0.60None
Larval trachea16 62 of 4 0.87None
Larval carcass12 21 of 4 0.65None
S2 cells (growing)18 34 of 4 0.95None
Whole fly19 42 of 4

Looking for FBgn0040730. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime