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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040732 through 18771 annotations produced 1 hits



(CG16926):

Annotation Number : CG16926
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040732
Gbrowse : chr2R:15387798-15388801 (-) // 100.0 //
Probeset : 1625583_at
Accessions : protein= NP_652364;, nucleotide= NM_144107;
FlyMine data for FBgn0040732.
BDGP gene expression has embryonic in situ data for CG16926: 4 pix of staining in 1 body parts.
BioGrid reports that CG16926 interacts with CG1986 .
VDRC has 3 RNAi stocks for FBgn0040732 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head401 ± 744 of 4 0.50Down
Eye80 ± 134 of 4 0.10Down
Thoracicoabdominal ganglion27 ± 201 of 4 0.00Down
Salivary gland4 ± 00 of 4 0.00Down
Crop103 ± 304 of 4 0.10Down
Midgut21 ± 10 of 4 0.00Down
Tubule49 ± 133 of 4 0.10Down
Hindgut466 ± 484 of 4 0.60Down
Heart4244 ± 2954 of 4 5.14Up
Fat body5029 ± 7804 of 4 6.09Up
Ovary16 ± 14 of 4 0.00Down
Testis8 ± 01 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca4931 ± 1144 of 4 5.98Up
Mated spermatheca4661 ± 3034 of 4 5.65Up
Adult carcass3802 ± 544 of 4 4.60Up
Larval CNS2 ± 10 of 4 0.00Down
Larval Salivary gland111 ± 54 of 4 0.14Down
Larval midgut15 ± 32 of 4 0.02Down
Larval tubule213 ± 154 of 4 0.30Down
Larval hindgut105 ± 124 of 4 0.13Down
Larval fat body7532 ± 8604 of 4 9.10Up
Larval trachea124 ± 1344 of 4 0.15Down
Larval carcass42 ± 133 of 4 0.05Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly825 ± 1164 of 4

Looking for FBgn0040732. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime