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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040735 through 18771 annotations produced 1 hits



(CG16836):

Annotation Number : CG16836
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040735
Gbrowse : chr2R:14276599-14276963 (+) // 100.0 //
Probeset : 1623669_at
Accessions : protein= NP_652367;, nucleotide= NM_144110;
FlyMine data for FBgn0040735.
BioGrid reports that CG16836 interacts with CG3427 .
VDRC has 2 RNAi stocks for FBgn0040735 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 14 of 4 0.20Down
Head2219 1654 of 4 5.60Up
Eye881 1304 of 4 2.24Up
Thoracicoabdominal ganglion46 34 of 4 0.10Down
Salivary gland11 30 of 4 0.03Down
Crop37 44 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule21 33 of 4 0.10Down
Hindgut107 124 of 4 0.30Down
Heart1135 1954 of 4 2.89Up
Fat body2701 2184 of 4 6.87Up
Ovary1 10 of 4 0.00Down
Testis2 00 of 4 0.00Down
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca1644 924 of 4 4.18Up
Mated spermatheca1196 2194 of 4 3.04Up
Adult carcass1492 734 of 4 3.80Up
Larval CNS5 21 of 4 0.01Down
Larval Salivary gland8 31 of 4 0.02Down
Larval midgut3 20 of 4 0.01Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut4 00 of 4 0.01Down
Larval fat body125 862 of 4 0.30None
Larval trachea10 131 of 4 0.03Down
Larval carcass13 43 of 4 0.03Down
S2 cells (growing)3 10 of 4 0.01Down
Whole fly393 794 of 4

Looking for FBgn0040735. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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