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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040743 through 18771 annotations produced 1 hits



(CG15919):

Annotation Number : CG15919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040743
Gbrowse : chr2R:12680161-12680585 (+) // 100.0 //
Probeset : 1637672_at
Accessions : protein= NP_652374;, nucleotide= NM_144117;
FlyMine data for FBgn0040743.
BioGrid reports that CG15919 interacts with CG7937 .
VDRC has 2 RNAi stocks for FBgn0040743 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.40None
Head4 ± 10 of 4 0.70None
Eye4 ± 20 of 4 0.71None
Thoracicoabdominal ganglion2 ± 00 of 4 0.40None
Salivary gland6 ± 20 of 4 0.96None
Crop3 ± 10 of 4 0.60None
Midgut4 ± 10 of 4 0.70None
Tubule5 ± 10 of 4 0.80None
Hindgut4 ± 10 of 4 0.70None
Heart11 ± 32 of 4 1.83None
Fat body8 ± 40 of 4 1.28None
Ovary2 ± 10 of 4 0.30None
Testis2 ± 10 of 4 0.40None
Male accessory glands3 ± 10 of 4 0.50None
Virgin spermatheca2 ± 10 of 4 0.37None
Mated spermatheca1 ± 00 of 4 0.23None
Adult carcass9 ± 20 of 4 1.40None
Larval CNS5 ± 30 of 4 0.88None
Larval Salivary gland4 ± 00 of 4 0.65None
Larval midgut8 ± 10 of 4 1.33None
Larval tubule3 ± 10 of 4 0.60None
Larval hindgut7 ± 10 of 4 1.11None
Larval fat body10 ± 31 of 4 1.60None
Larval trachea3 ± 30 of 4 0.51None
Larval carcass26 ± 30 of 4 4.07Up
S2 cells (growing)1 ± 00 of 4 0.23None
Whole fly6 ± 20 of 4

Looking for FBgn0040743. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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