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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040747 through 18771 annotations produced 1 hits



(CG12853):

Annotation Number : CG12853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040747
Gbrowse : chr2R:10821029-10821431 (+) // 100.0 //
Probeset : 1634251_at
Accessions : protein= NP_652377;, nucleotide= NM_144120;
FlyMine data for FBgn0040747.
VDRC has 4 RNAi stocks for FBgn0040747 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head4 ± 01 of 4 0.00Down
Eye3 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland8 ± 20 of 4 0.03Down
Crop69 ± 54 of 4 0.30Down
Midgut2 ± 10 of 4 0.00Down
Tubule3 ± 10 of 4 0.00Down
Hindgut9 ± 13 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body2 ± 20 of 4 0.01Down
Ovary0 ± 00 of 4 0.00Down
Testis2576 ± 1124 of 4 9.60Up
Male accessory glands7 ± 20 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.01Down
Mated spermatheca4 ± 21 of 4 0.02Down
Adult carcass7 ± 20 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut3 ± 10 of 4 0.01Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut4 ± 00 of 4 0.02Down
Larval fat body182 ± 934 of 4 0.70None
Larval trachea10 ± 101 of 4 0.04Down
Larval carcass0 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly267 ± 244 of 4

Looking for FBgn0040747. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime