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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040759 through 18771 annotations produced 1 hits


Annotation Number : CT32418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040759
Gbrowse : chr2R:8051481-8051692 (+) // 100.0 //
Probeset : 1628197_at
Accessions : protein= NP_001097281;, nucleotide= NM_001103811;
FlyMine data for FBgn0040759.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.20Down
Head6 10 of 4 0.20Down
Eye5 00 of 4 0.16Down
Thoracicoabdominal ganglion10 10 of 4 0.30Down
Salivary gland27 50 of 4 0.74None
Crop5 10 of 4 0.10Down
Midgut11 10 of 4 0.30Down
Tubule8 10 of 4 0.20Down
Hindgut2547 1484 of 468.40Up
Heart3 10 of 4 0.08Down
Fat body11 51 of 4 0.31Down
Ovary1 00 of 4 0.00Down
Testis7 11 of 4 0.20Down
Male accessory glands5 10 of 4 0.20Down
Virgin spermatheca10 00 of 4 0.28Down
Mated spermatheca9 10 of 4 0.26Down
Adult carcass89 84 of 4 2.40Up
Larval CNS5 10 of 4 0.16Down
Larval Salivary gland5 20 of 4 0.14Down
Larval midgut16 30 of 4 0.44Down
Larval tubule8 11 of 4 0.20Down
Larval hindgut2576 1344 of 469.11Up
Larval fat body16 22 of 4 0.50Down
Larval trachea30 353 of 4 0.80None
Larval carcass523 1044 of 414.04Up
S2 cells (growing)4 10 of 4 0.11Down
Whole fly37 34 of 4

Looking for FBgn0040759. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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