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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040764 through 18771 annotations produced 1 hits



(CG13230):

Annotation Number : CG13230
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040764
Gbrowse : chr2R:7042432-7042731 (+) // 100.0 //
Probeset : 1625066_at
Accessions : protein= NP_652388;, nucleotide= NM_144131;
FlyMine data for FBgn0040764.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 0.80None
Head4 ± 21 of 4 0.50None
Eye2 ± 10 of 4 0.24Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.50None
Salivary gland12 ± 40 of 4 1.36None
Crop4 ± 10 of 4 0.50None
Midgut9 ± 30 of 4 1.10None
Tubule5 ± 00 of 4 0.60Down
Hindgut4 ± 10 of 4 0.50None
Heart1 ± 00 of 4 0.22Down
Fat body6 ± 41 of 4 0.69None
Ovary2 ± 00 of 4 0.30None
Testis21 ± 43 of 4 2.30None
Male accessory glands12 ± 01 of 4 1.30None
Virgin spermatheca9 ± 10 of 4 1.04None
Mated spermatheca7 ± 20 of 4 0.86None
Adult carcass10 ± 20 of 4 1.10None
Larval CNS6 ± 12 of 4 0.70None
Larval Salivary gland4 ± 10 of 4 0.49None
Larval midgut7 ± 20 of 4 0.80None
Larval tubule3 ± 00 of 4 0.40None
Larval hindgut21 ± 54 of 4 2.38None
Larval fat body17 ± 51 of 4 1.90None
Larval trachea146 ± 1704 of 416.27None
Larval carcass2079 ± 2234 of 4230.37Up
S2 cells (growing)3 ± 00 of 4 0.38None
Whole fly9 ± 20 of 4

Looking for FBgn0040764. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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