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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040773 through 18771 annotations produced 2 hits



anon-fast-evolving-3A1 (CG2249):

Annotation Number : CG2249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040773
Gbrowse : chr2R:5936987-5937568 (+) // 100.0 //
Probeset : 1625128_a_at
Accessions : protein= NP_652397; /// NP_788298;, nucleotide= NM_144140; /// NM_176118;
Pathway : cytochrome c to oxygen // non-traceable author statement /// 0055114 // oxidation reduction // inferred from electronic
Interpro : 0005751 // mitochondrial respiratory chain complex IV // inferred from sequence or structural similarity
FlyMine data for FBgn0040773.
BioGrid reports that CG2249 interacts with CG3647 CG4827 CG9986 .
VDRC has 2 RNAi stocks for FBgn0040773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1894 444 of 4 0.90None
Head2476 914 of 4 1.20Up
Eye3188 654 of 4 1.56Up
Thoracicoabdominal ganglion2612 614 of 4 1.30Up
Salivary gland4664 834 of 4 2.28Up
Crop2107 1474 of 4 1.00None
Midgut2581 874 of 4 1.30Up
Tubule2943 404 of 4 1.40Up
Hindgut3237 474 of 4 1.60Up
Heart3196 1274 of 4 1.56Up
Fat body3180 2404 of 4 1.56Up
Ovary1058 154 of 4 0.50Down
Testis247 124 of 4 0.10Down
Male accessory glands2302 1084 of 4 1.10None
Virgin spermatheca2608 1634 of 4 1.28Up
Mated spermatheca2565 584 of 4 1.26Up
Adult carcass4444 2494 of 4 2.20Up
Larval CNS1462 954 of 4 0.72Down
Larval Salivary gland2591 574 of 4 1.27Up
Larval midgut2803 214 of 4 1.37Up
Larval tubule2269 2204 of 4 1.10None
Larval hindgut2904 404 of 4 1.42Up
Larval fat body1168 1634 of 4 0.60Down
Larval trachea1823 704 of 4 0.89None
Larval carcass2836 2104 of 4 1.39Up
S2 cells (growing)1523 304 of 4 0.75Down
Whole fly2043 1094 of 4



anon-fast-evolving-3A1 (CG2249):

Annotation Number : CG2249
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040773
Gbrowse : chr2R:5936987-5938379 (+) // 100.0 //
Probeset : 1636323_at
Accessions : protein= NP_652397; /// NP_788298;, nucleotide= NM_144140; /// NM_176118;
Pathway : cytochrome c to oxygen // non-traceable author statement /// 0055114 // oxidation reduction // inferred from electronic
Interpro : 0005751 // mitochondrial respiratory chain complex IV // inferred from sequence or structural similarity
FlyMine data for FBgn0040773.
BioGrid reports that CG2249 interacts with CG3647 CG4827 CG9986 .
VDRC has 2 RNAi stocks for FBgn0040773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 12 of 4 0.10Down
Head6 13 of 4 0.10Down
Eye2 10 of 4 0.04Down
Thoracicoabdominal ganglion5 00 of 4 0.10Down
Salivary gland10 20 of 4 0.18Down
Crop7 22 of 4 0.10Down
Midgut6 02 of 4 0.10Down
Tubule11 03 of 4 0.20Down
Hindgut4 01 of 4 0.10Down
Heart6 02 of 4 0.11Down
Fat body12 24 of 4 0.21Down
Ovary2 01 of 4 0.00Down
Testis755 504 of 412.80Up
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca8 04 of 4 0.15Down
Mated spermatheca11 04 of 4 0.19Down
Adult carcass13 41 of 4 0.20Down
Larval CNS4 03 of 4 0.08Down
Larval Salivary gland4 10 of 4 0.07Down
Larval midgut2 00 of 4 0.04Down
Larval tubule4 11 of 4 0.10Down
Larval hindgut4 01 of 4 0.07Down
Larval fat body81 354 of 4 1.40None
Larval trachea8 92 of 4 0.14Down
Larval carcass3 00 of 4 0.06Down
S2 cells (growing)2 00 of 4 0.03Down
Whole fly59 44 of 4

Looking for FBgn0040773. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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