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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040777 through 18771 annotations produced 1 hits



(CG14767):

Annotation Number : CG14767
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040777
Gbrowse : chr2R:4605516-4611342 (-) // 100.0 //
Probeset : 1637671_a_at
Accessions : protein= NP_652400; /// NP_724705; /// NP_724706;, nucleotide= NM_144143; /// NM_165619; /// NM_165620;
Pathway : 0005765 // lysosomal membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane //
Interpro : 0015205 // nucleobase transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0040777.
TRiP has 1 RNAi stocks for FBgn0040777 available for purchase.
VDRC has 3 RNAi stocks for FBgn0040777 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1633 ± 324 of 4 2.50Up
Head1245 ± 274 of 4 1.90Up
Eye1676 ± 274 of 4 2.58Up
Thoracicoabdominal ganglion2104 ± 204 of 4 3.20Up
Salivary gland3949 ± 1314 of 4 6.07Up
Crop929 ± 244 of 4 1.40Up
Midgut677 ± 294 of 4 1.00None
Tubule1212 ± 1024 of 4 1.90Up
Hindgut807 ± 144 of 4 1.20Up
Heart1660 ± 234 of 4 2.55Up
Fat body1013 ± 514 of 4 1.56Up
Ovary587 ± 74 of 4 0.90Down
Testis250 ± 174 of 4 0.40Down
Male accessory glands2449 ± 464 of 4 3.80Up
Virgin spermatheca1734 ± 454 of 4 2.67Up
Mated spermatheca1688 ± 334 of 4 2.60Up
Adult carcass1008 ± 234 of 4 1.60Up
Larval CNS1123 ± 394 of 4 1.73Up
Larval Salivary gland3320 ± 214 of 4 5.11Up
Larval midgut625 ± 444 of 4 0.96None
Larval tubule1856 ± 324 of 4 2.90Up
Larval hindgut716 ± 284 of 4 1.10None
Larval fat body1436 ± 1434 of 4 2.20Up
Larval trachea932 ± 934 of 4 1.43Up
Larval carcass764 ± 244 of 4 1.18Up
S2 cells (growing)1454 ± 164 of 4 2.24Up
Whole fly650 ± 194 of 4

Looking for FBgn0040777. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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