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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040778 through 18771 annotations produced 1 hits



(CG17977):

Annotation Number : CG17977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040778
Gbrowse : chr2R:3954113-3955157 (-) // 100.0 //
Probeset : 1637180_at
Accessions : protein= NP_652401;, nucleotide= NM_144144;
FlyMine data for FBgn0040778.
BioGrid reports that CG17977 interacts with CG8997 .
VDRC has 1 RNAi stocks for FBgn0040778 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 54 of 4 3.70Up
Head52 54 of 4 1.00None
Eye47 44 of 4 0.95None
Thoracicoabdominal ganglion153 84 of 4 3.10Up
Salivary gland19 60 of 4 0.39Down
Crop14 13 of 4 0.30Down
Midgut9 20 of 4 0.20Down
Tubule7 00 of 4 0.20Down
Hindgut11 11 of 4 0.20Down
Heart8 03 of 4 0.18Down
Fat body9 20 of 4 0.20Down
Ovary80 24 of 4 1.60Up
Testis196 94 of 4 3.90Up
Male accessory glands8 10 of 4 0.20Down
Virgin spermatheca6 21 of 4 0.13Down
Mated spermatheca10 22 of 4 0.20Down
Adult carcass12 30 of 4 0.30Down
Larval CNS155 94 of 4 3.11Up
Larval Salivary gland11 21 of 4 0.24Down
Larval midgut5 10 of 4 0.12Down
Larval tubule15 13 of 4 0.30Down
Larval hindgut8 12 of 4 0.16Down
Larval fat body47 183 of 4 1.00None
Larval trachea30 04 of 4 0.60None
Larval carcass11 23 of 4 0.22Down
S2 cells (growing)22 24 of 4 0.46Down
Whole fly49 64 of 4

Looking for FBgn0040778. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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