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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040786 through 18771 annotations produced 1 hits



(CG14104):

Annotation Number : CG14104
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040786
Gbrowse : chr3L:19800039-19800345 (-) // 100.0 //
Probeset : 1633626_at
Accessions : protein= NP_652408;, nucleotide= NM_144151;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040786.
BioGrid reports that CG14104 interacts with CG4602 CG4858 CG8983 CG14447 CG2960 CG32479 CG4071 .
VDRC has 3 RNAi stocks for FBgn0040786 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 02 of 4 0.90None
Head35 ± 04 of 4 1.20None
Eye21 ± 24 of 4 0.72None
Thoracicoabdominal ganglion24 ± 11 of 4 0.80None
Salivary gland31 ± 42 of 4 1.05None
Crop42 ± 14 of 4 1.40Up
Midgut30 ± 23 of 4 1.00None
Tubule15 ± 11 of 4 0.50Down
Hindgut33 ± 14 of 4 1.10None
Heart30 ± 34 of 4 1.03None
Fat body54 ± 54 of 4 1.82Up
Ovary40 ± 04 of 4 1.40None
Testis25 ± 34 of 4 0.90None
Male accessory glands73 ± 84 of 4 2.50Up
Virgin spermatheca38 ± 34 of 4 1.29None
Mated spermatheca34 ± 63 of 4 1.16None
Adult carcass31 ± 41 of 4 1.00None
Larval CNS97 ± 124 of 4 3.28Up
Larval Salivary gland43 ± 24 of 4 1.47Up
Larval midgut32 ± 13 of 4 1.10None
Larval tubule28 ± 23 of 4 1.00None
Larval hindgut58 ± 64 of 4 1.98Up
Larval fat body26 ± 23 of 4 0.90None
Larval trachea40 ± 44 of 4 1.37None
Larval carcass45 ± 74 of 4 1.53None
S2 cells (growing)53 ± 14 of 4 1.81Up
Whole fly29 ± 44 of 4

Looking for FBgn0040786. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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