FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040793 through 18771 annotations produced 3 hits

(CG7630):

Annotation Number : CG7630
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040793
Gbrowse : chr3L:17418587-17419224 (+) // 100.0 //
Probeset : 1641076_at
Accessions : protein= NP_652413;, nucleotide= NM_144156;
Pathway : 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0040793.
BDGP gene expression has embryonic in situ data for CG7630: 9 pix of staining in 14 body parts.
VDRC has 3 RNAi stocks for FBgn0040793 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 2	2 of 4	2.20	Up
Head	4 ± 1	0 of 4	0.80	None
Eye	6 ± 1	1 of 4	1.13	None
Thoracicoabdominal ganglion	12 ± 3	3 of 4	2.20	None
Salivary gland	11 ± 1	0 of 4	2.08	Up
Crop	5 ± 0	0 of 4	1.00	None
Midgut	8 ± 1	0 of 4	1.60	None
Tubule	7 ± 0	0 of 4	1.30	Up
Hindgut	9 ± 1	0 of 4	1.80	None
Heart	9 ± 0	3 of 4	1.73	None
Fat body	12 ± 4	1 of 4	2.25	Up
Ovary	3 ± 1	0 of 4	0.70	None
Testis	2 ± 0	0 of 4	0.50	None
Male accessory glands	4 ± 1	0 of 4	0.90	None
Virgin spermatheca	4 ± 1	1 of 4	0.90	None
Mated spermatheca	4 ± 1	0 of 4	0.80	None
Adult carcass	9 ± 3	0 of 4	1.70	None
Larval CNS	6 ± 2	0 of 4	1.11	None
Larval Salivary gland	6 ± 1	0 of 4	1.12	None
Larval midgut	3 ± 2	1 of 4	0.59	None
Larval tubule	4 ± 1	0 of 4	0.80	None
Larval hindgut	3 ± 1	0 of 4	0.61	None
Larval fat body	3 ± 1	0 of 4	0.70	None
Larval trachea	4 ± 2	1 of 4	0.78	None
Larval carcass	2 ± 0	0 of 4	0.49	None
S2 cells (growing)	4 ± 1	0 of 4	0.88	None
Whole fly	5 ± 1	0 of 4

(CG7630):

Annotation Number : CG7630
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040793
Gbrowse : chr3L:17418587-17419387 (+) // 100.0 //
Probeset : 1632440_at
Accessions : protein= NP_652413;, nucleotide= NM_144156;
Pathway : 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0040793.
BDGP gene expression has embryonic in situ data for CG7630: 9 pix of staining in 14 body parts.
VDRC has 3 RNAi stocks for FBgn0040793 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2162 ± 41	4 of 4	0.80	None
Head	2830 ± 116	4 of 4	1.10	None
Eye	3233 ± 72	4 of 4	1.26	Up
Thoracicoabdominal ganglion	2807 ± 70	4 of 4	1.10	None
Salivary gland	5367 ± 199	4 of 4	2.09	Up
Crop	2796 ± 151	4 of 4	1.10	None
Midgut	2491 ± 95	4 of 4	1.00	None
Tubule	4640 ± 111	4 of 4	1.80	Up
Hindgut	3283 ± 55	4 of 4	1.30	Up
Heart	4375 ± 260	4 of 4	1.71	Up
Fat body	4210 ± 381	4 of 4	1.64	Up
Ovary	1606 ± 7	4 of 4	0.60	Down
Testis	227 ± 6	4 of 4	0.10	Down
Male accessory glands	2031 ± 68	4 of 4	0.80	None
Virgin spermatheca	4257 ± 140	4 of 4	1.66	Up
Mated spermatheca	4142 ± 57	4 of 4	1.62	Up
Adult carcass	4253 ± 233	4 of 4	1.70	Up
Larval CNS	1824 ± 53	4 of 4	0.71	Down
Larval Salivary gland	3407 ± 90	4 of 4	1.33	Up
Larval midgut	4528 ± 159	4 of 4	1.77	Up
Larval tubule	2324 ± 132	4 of 4	0.90	None
Larval hindgut	3794 ± 57	4 of 4	1.48	Up
Larval fat body	891 ± 98	4 of 4	0.30	Down
Larval trachea	2109 ± 108	4 of 4	0.82	None
Larval carcass	3384 ± 327	4 of 4	1.32	None
S2 cells (growing)	1735 ± 17	4 of 4	0.68	Down
Whole fly	2562 ± 191	4 of 4

(CG7630):

Annotation Number : CG7630
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040793
Gbrowse : chr3L:17418587-17419387 (+) // 100.0 //
Probeset : 1627402_a_at
Accessions : protein= NP_652413;, nucleotide= NM_144156;
Pathway : 0005811 // lipid particle // inferred from direct assay
FlyMine data for FBgn0040793.
BDGP gene expression has embryonic in situ data for CG7630: 9 pix of staining in 14 body parts.
VDRC has 3 RNAi stocks for FBgn0040793 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1853 ± 42	4 of 4	0.90	Down
Head	2479 ± 99	4 of 4	1.10	Up
Eye	2349 ± 46	4 of 4	1.08	None
Thoracicoabdominal ganglion	2080 ± 57	4 of 4	1.00	None
Salivary gland	4202 ± 98	4 of 4	1.94	Up
Crop	2164 ± 114	4 of 4	1.00	None
Midgut	2816 ± 95	4 of 4	1.30	Up
Tubule	1090 ± 39	4 of 4	0.50	Down
Hindgut	3345 ± 91	4 of 4	1.50	Up
Heart	3181 ± 96	4 of 4	1.47	Up
Fat body	3556 ± 230	4 of 4	1.64	Up
Ovary	1188 ± 15	4 of 4	0.50	Down
Testis	204 ± 3	4 of 4	0.10	Down
Male accessory glands	1436 ± 17	4 of 4	0.70	Down
Virgin spermatheca	855 ± 72	4 of 4	0.39	Down
Mated spermatheca	888 ± 93	4 of 4	0.41	Down
Adult carcass	3986 ± 179	4 of 4	1.80	Up
Larval CNS	1344 ± 62	4 of 4	0.62	Down
Larval Salivary gland	2032 ± 36	4 of 4	0.94	None
Larval midgut	3115 ± 71	4 of 4	1.43	Up
Larval tubule	1713 ± 150	4 of 4	0.80	Down
Larval hindgut	2899 ± 39	4 of 4	1.34	Up
Larval fat body	710 ± 86	4 of 4	0.30	Down
Larval trachea	1657 ± 140	4 of 4	0.76	Down
Larval carcass	2888 ± 233	4 of 4	1.33	None
S2 cells (growing)	1428 ± 39	4 of 4	0.66	Down
Whole fly	2171 ± 57	4 of 4

Looking for FBgn0040793. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720