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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040794 through 18771 annotations produced 1 hits



(CG13056):

Annotation Number : CG13056
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040794
Gbrowse : chr3L:16326589-16326802 (+) // 100.0 //
Probeset : 1638054_at
Accessions : protein= NP_652414;, nucleotide= NM_144157;
FlyMine data for FBgn0040794.
VDRC has 1 RNAi stocks for FBgn0040794 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 12 of 4 0.90None
Head8 ± 10 of 4 1.10None
Eye10 ± 21 of 4 1.26None
Thoracicoabdominal ganglion714 ± 614 of 489.20Up
Salivary gland13 ± 50 of 4 1.65None
Crop12 ± 31 of 4 1.50None
Midgut6 ± 20 of 4 0.80None
Tubule6 ± 10 of 4 0.80None
Hindgut7 ± 01 of 4 0.90None
Heart3 ± 00 of 4 0.40None
Fat body10 ± 21 of 4 1.29None
Ovary3 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.20None
Male accessory glands10 ± 30 of 4 1.30None
Virgin spermatheca1 ± 00 of 4 0.20None
Mated spermatheca1 ± 00 of 4 0.23None
Adult carcass5 ± 10 of 4 0.70None
Larval CNS18 ± 74 of 4 2.37None
Larval Salivary gland8 ± 00 of 4 1.07None
Larval midgut10 ± 20 of 4 1.29None
Larval tubule3 ± 10 of 4 0.40None
Larval hindgut8 ± 10 of 4 1.04None
Larval fat body3 ± 10 of 4 0.50None
Larval trachea4 ± 30 of 4 0.56None
Larval carcass6 ± 10 of 4 0.85None
S2 cells (growing)3 ± 00 of 4 0.38None
Whole fly8 ± 20 of 4

Looking for FBgn0040794. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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