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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040796 through 18771 annotations produced 1 hits



(CG13064):

Annotation Number : CT32283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040796
Gbrowse : chr3L:16273643-16273905 (+) // 100.0 //
Probeset : 1631865_at
Accessions : protein= NP_996106;, nucleotide= NM_206384;
FlyMine data for FBgn0040796.
VDRC has 3 RNAi stocks for FBgn0040796 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 00 of 4 0.90None
Head12 ± 00 of 4 1.10None
Eye7 ± 00 of 4 0.62None
Thoracicoabdominal ganglion16 ± 51 of 4 1.40None
Salivary gland39 ± 81 of 4 3.30Up
Crop15 ± 30 of 4 1.30None
Midgut18 ± 30 of 4 1.50None
Tubule13 ± 10 of 4 1.10None
Hindgut20 ± 22 of 4 1.70None
Heart8 ± 10 of 4 0.71None
Fat body29 ± 70 of 4 2.47Up
Ovary9 ± 00 of 4 0.80None
Testis9 ± 30 of 4 0.70None
Male accessory glands21 ± 41 of 4 1.80None
Virgin spermatheca22 ± 21 of 4 1.86Up
Mated spermatheca19 ± 50 of 4 1.66None
Adult carcass29 ± 41 of 4 2.50Up
Larval CNS10 ± 32 of 4 0.86None
Larval Salivary gland19 ± 20 of 4 1.63None
Larval midgut13 ± 30 of 4 1.16None
Larval tubule15 ± 20 of 4 1.30None
Larval hindgut12 ± 30 of 4 1.04None
Larval fat body15 ± 20 of 4 1.30None
Larval trachea7 ± 20 of 4 0.67None
Larval carcass23 ± 20 of 4 1.94Up
S2 cells (growing)12 ± 10 of 4 1.06None
Whole fly12 ± 20 of 4

Looking for FBgn0040796. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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