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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040805 through 18771 annotations produced 1 hits



(CG12355):

Annotation Number : CT23766
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040805
Gbrowse : chr3L:15486057-15487143 (-) // 100.0 //
Probeset : 1624995_at
Accessions : protein= NP_001097610; /// NP_001163446; /// NP_001163447; /// NP_996091;, nucleotide= NM_001104140; /// NM_001169975; /// NM_001169976; /// NM_206369;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
FlyMine data for FBgn0040805.
VDRC has 2 RNAi stocks for FBgn0040805 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain446 214 of 4 5.70Up
Head199 114 of 4 2.60Up
Eye143 74 of 4 1.83Up
Thoracicoabdominal ganglion767 174 of 4 9.80Up
Salivary gland80 84 of 4 1.03None
Crop14 24 of 4 0.20Down
Midgut160 164 of 4 2.10Up
Tubule1749 2254 of 422.40Up
Hindgut71 24 of 4 0.90None
Heart7 12 of 4 0.10Down
Fat body7 23 of 4 0.10Down
Ovary14 14 of 4 0.20Down
Testis456 184 of 4 5.90Up
Male accessory glands38 24 of 4 0.50Down
Virgin spermatheca4 11 of 4 0.06Down
Mated spermatheca6 11 of 4 0.09Down
Adult carcass19 33 of 4 0.30Down
Larval CNS109 204 of 4 1.40None
Larval Salivary gland2 10 of 4 0.03Down
Larval midgut117 134 of 4 1.50None
Larval tubule25 34 of 4 0.30Down
Larval hindgut19 34 of 4 0.25Down
Larval fat body41 184 of 4 0.50None
Larval trachea6 52 of 4 0.09Down
Larval carcass4 11 of 4 0.06Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly78 04 of 4

Looking for FBgn0040805. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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