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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040814 through 18771 annotations produced 1 hits


(CG14113):

Annotation Number : CG14113
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040814
Gbrowse : chr3L:13322317-13322805 (+) // 100.0 //
Probeset : 1623202_at
Accessions : protein= NP_652431;, nucleotide= NM_144174;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040814.
BioGrid reports that CG14113 interacts with CG15374 CG3454 CG9273 CG15631 .
VDRC has 1 RNAi stocks for FBgn0040814 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland12 ± 30 of 4 0.14Down
Crop4 ± 10 of 4 0.00Down
Midgut7 ± 10 of 4 0.10Down
Tubule5 ± 10 of 4 0.10Down
Hindgut5 ± 20 of 4 0.10Down
Heart2 ± 10 of 4 0.03Down
Fat body9 ± 40 of 4 0.11Down
Ovary0 ± 00 of 4 0.00Down
Testis935 ± 54 of 410.30Up
Male accessory glands8 ± 40 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca8 ± 20 of 4 0.10Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.03Down
Larval Salivary gland5 ± 20 of 4 0.06Down
Larval midgut5 ± 10 of 4 0.06Down
Larval tubule6 ± 20 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.02Down
Larval fat body153 ± 663 of 4 1.70None
Larval trachea5 ± 61 of 4 0.06Down
Larval carcass2 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly90 ± 24 of 4

Looking for FBgn0040814. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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