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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040816 through 18771 annotations produced 1 hits


Annotation Number : CG12521
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040816
Gbrowse : chr3L:11840434-11840903 (-) // 100.0 //
Probeset : 1637511_at
Accessions : protein= NP_652433;, nucleotide= NM_144176;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040816.
BioGrid reports that CG12521 interacts with CG2699 CG13458 CG30365 CG31029 CG6733 CG8715 CG9273 CG9839 .
VDRC has 3 RNAi stocks for FBgn0040816 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland11 40 of 4 0.23Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut3 10 of 4 0.10Down
Heart0 00 of 4 0.01Down
Fat body1 10 of 4 0.03Down
Ovary1 00 of 4 0.00Down
Testis647 104 of 412.80Up
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.03Down
Adult carcass1 00 of 4 0.00Down
Larval CNS1 10 of 4 0.04Down
Larval Salivary gland2 10 of 4 0.04Down
Larval midgut2 00 of 4 0.05Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.04Down
Larval fat body38 143 of 4 0.80None
Larval trachea5 31 of 4 0.11Down
Larval carcass2 00 of 4 0.05Down
S2 cells (growing)8 01 of 4 0.18Down
Whole fly50 44 of 4

Looking for FBgn0040816. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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