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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040817 through 18771 annotations produced 1 hits


Annotation Number : CG14132
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040817
Gbrowse : chr3L:11705702-11706308 (-) // 100.0 //
Probeset : 1626812_at
Accessions : protein= NP_001097586;, nucleotide= NM_001104116;
FlyMine data for FBgn0040817.
VDRC has 4 RNAi stocks for FBgn0040817 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head105 74 of 4 3.30Up
Eye312 264 of 4 9.78Up
Thoracicoabdominal ganglion5 11 of 4 0.20Down
Salivary gland16 80 of 4 0.52None
Crop236 134 of 4 7.40Up
Midgut35 22 of 4 1.10None
Tubule12 10 of 4 0.40Down
Hindgut175 24 of 4 5.50Up
Heart21 23 of 4 0.67None
Fat body32 33 of 4 1.01None
Ovary6 10 of 4 0.20Down
Testis6 20 of 4 0.20Down
Male accessory glands10 30 of 4 0.30Down
Virgin spermatheca31 14 of 4 0.99None
Mated spermatheca37 24 of 4 1.17None
Adult carcass79 74 of 4 2.50Up
Larval CNS34 34 of 4 1.07None
Larval Salivary gland36 42 of 4 1.15None
Larval midgut101 144 of 4 3.17Up
Larval tubule27 34 of 4 0.80None
Larval hindgut180 134 of 4 5.65Up
Larval fat body18 32 of 4 0.60Down
Larval trachea821 864 of 425.70Up
Larval carcass329 774 of 410.33Up
S2 cells (growing)11 11 of 4 0.37Down
Whole fly32 33 of 4

Looking for FBgn0040817. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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